PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00059.1.g01340.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 1205aa MW: 130412 Da PI: 6.176

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00059.1.g01340.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.1	2e-20	134	189	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Zjn_sc00059.1.g01340.1.am.mk 134 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 189 688999***********************************************998 PP
2	START	115.9	5.7e-37	408	586	43	205
SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEE CS START 43 dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg........galqlmvaelqalsplvp.Rdfv 110 ++e +r+s+vv+m++ +lv +l+ + +W e ++ ka +++vis g g l lm+a+lq++splvp R++v Zjn_sc00059.1.g01340.1.am.mk 408 TRTEGSRDSAVVIMNSITLVDAFLNAN-KWMELFPsivsKARIIQVISHGaasgnmgsGSLLLMQADLQFPSPLVPvREVV 487 57899********************.******9************************************** PP EEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHH CS START 111 fvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvks 187 f Ry+ + +g+w ivd v+ + s+vv++ ++pSg++i++++ng+s+v+wveh++ g h +++ v Zjn_sc00059.1.g01340.1.am.mk 488 FFRYCVHnSDEGTWSIVDFPVEGFDLEVLqASPVVKSLRRPSGCMIQDMPNGYSRVVWVEHMEIVGEEKplHPVFKDYVAG 568 ***9999******998888888*****************************98765449****** PP HHHHHHHHHHHHTXXXXX CS START 188 glaegaktwvatlqrqce 205 g+a+ga +wv+ lqrqce Zjn_sc00059.1.g01340.1.am.mk 569 GAAFGATRWVSLLQRQCE 586 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-19	125	192	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	131	191	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-20	132	195	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-19	132	195	IPR001356	Homeobox domain
CDD	cd00086	1.12E-18	134	192	No hit	No description
Pfam	PF00046	5.4E-18	134	189	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	166	189	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.094	341	590	IPR002913	START domain
SuperFamily	SSF55961	1.51E-23	344	586	No hit	No description
SMART	SM00234	2.1E-15	350	587	IPR002913	START domain
CDD	cd08875	1.09E-90	361	586	No hit	No description
Pfam	PF01852	4.4E-30	408	586	IPR002913	START domain
SuperFamily	SSF55961	2.33E-10	598	803	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1205 aa Download sequence Send to blast
MFGDYGDCQV LSTMAGASSS GDGLFIPNPG ALASFMSSSA AMPFQFSTPA SIIPKEEGGV 60 MGALQVSKDE EMELEMDMEL SGGSGSGHFD GLLGFADVDD DRPENKPQNG CLDIQPADGG 120 KQEQNNQLVV NGKKKRYHRH TAHQIQQMEA LFKECPHPDD KQRLKLSQEL GLKPRQVKFW 180 FQNRRTQMKA QQDRADNVLL RAENESLKGE NFRLQAAIRN VVCPNCGHAA VLGEMSFEEQ 240 QLRIENARLK DELDRLACIT TRYGGGGGWQ SSLSASGLGL STPSALLMPP VDLDMNVYSR 300 HFTYPPSIME NIPPVMALQP QISDHHAASS PYVSGLMAPV LEQDRQLVVD LAATAADALT 360 KMCRTGEPLW APRGGASAEV MVPEEHSRIF SWPVDGGKQS EASAANATRT EGSRDSAVVI 420 MNSITLVDAF LNANKWMELF PSIVSKARII QVISHGAASG NMGSGSLLLM QADLQFPSPL 480 VPVREVVFFR YCVHNSDEGT WSIVDFPVEG FDLEVLQASP VVKSLRRPSG CMIQDMPNGY 540 SRVVWVEHME IVGEEKPLHP VFKDYVAGGA AFGATRWVSL LQRQCELIRT PEARANMMKL 600 SQRMITTFCG NISAAGSQSW TALSDCTEDT FRVATRKNTD LGQPSGVILT AVSTSWLPFS 660 HQRVFELLAD EQQRCQAASN SSQNVELLLQ ESSTHPDGGS LVVFATVDVD AIQVTMSGDD 720 PSQIPLLPLG FAIFPAPNPS PAATSANSGN GESSSSGHTD EPASGCLLTV GMQVLASAVP 780 SAKLNLSSVT AINSHVCNAI HQITTALKGT GTPQAESPTA RRRVCEEESR ANQLRPHPGI 840 QGSLLLLSGF TVWLVAVAGV RLGVVHALVL PFLFLPRPSS YLNALPFCGV ASHWIPVFSR 900 FAFARDMLVS GVILVGRCLV GGGDMPLVVN ETTDCVVFRA LLSSSTASPA FLRALVRTRY 960 RRLCTARSRL SGFPRRIRTY EDSRSLSPHK ADDGASNDLA AWWDTEDLNS SSDACRATAS 1020 MSSAQSHNSE ERAWTFCCST QSRDVLKYSA RRPSISSAWS SASDLSDNNS ASPGQQCSIL 1080 IVIMVLETVW LPKTVLTGRL VHEVVDRALQ QFVWSQLRSL EPPSKPILLW LNNHRFPSSA 1140 VAMDLCLDAN VVAIWLQSTV TTSPMAPSPT SDFVGSPASV ETDCLVGSSG KPLHYSLGAS 1200 KLFGR

Sequence ? help Back to Top

Protein Sequence Length: 1205 aa Download sequence Send to blast

MFGDYGDCQV LSTMAGASSS GDGLFIPNPG ALASFMSSSA AMPFQFSTPA SIIPKEEGGV  60
MGALQVSKDE EMELEMDMEL SGGSGSGHFD GLLGFADVDD DRPENKPQNG CLDIQPADGG  120
KQEQNNQLVV NGKKKRYHRH TAHQIQQMEA LFKECPHPDD KQRLKLSQEL GLKPRQVKFW  180
FQNRRTQMKA QQDRADNVLL RAENESLKGE NFRLQAAIRN VVCPNCGHAA VLGEMSFEEQ  240
QLRIENARLK DELDRLACIT TRYGGGGGWQ SSLSASGLGL STPSALLMPP VDLDMNVYSR  300
HFTYPPSIME NIPPVMALQP QISDHHAASS PYVSGLMAPV LEQDRQLVVD LAATAADALT  360
KMCRTGEPLW APRGGASAEV MVPEEHSRIF SWPVDGGKQS EASAANATRT EGSRDSAVVI  420
MNSITLVDAF LNANKWMELF PSIVSKARII QVISHGAASG NMGSGSLLLM QADLQFPSPL  480
VPVREVVFFR YCVHNSDEGT WSIVDFPVEG FDLEVLQASP VVKSLRRPSG CMIQDMPNGY  540
SRVVWVEHME IVGEEKPLHP VFKDYVAGGA AFGATRWVSL LQRQCELIRT PEARANMMKL  600
SQRMITTFCG NISAAGSQSW TALSDCTEDT FRVATRKNTD LGQPSGVILT AVSTSWLPFS  660
HQRVFELLAD EQQRCQAASN SSQNVELLLQ ESSTHPDGGS LVVFATVDVD AIQVTMSGDD  720
PSQIPLLPLG FAIFPAPNPS PAATSANSGN GESSSSGHTD EPASGCLLTV GMQVLASAVP  780
SAKLNLSSVT AINSHVCNAI HQITTALKGT GTPQAESPTA RRRVCEEESR ANQLRPHPGI  840
QGSLLLLSGF TVWLVAVAGV RLGVVHALVL PFLFLPRPSS YLNALPFCGV ASHWIPVFSR  900
FAFARDMLVS GVILVGRCLV GGGDMPLVVN ETTDCVVFRA LLSSSTASPA FLRALVRTRY  960
RRLCTARSRL SGFPRRIRTY EDSRSLSPHK ADDGASNDLA AWWDTEDLNS SSDACRATAS  1020
MSSAQSHNSE ERAWTFCCST QSRDVLKYSA RRPSISSAWS SASDLSDNNS ASPGQQCSIL  1080
IVIMVLETVW LPKTVLTGRL VHEVVDRALQ QFVWSQLRSL EPPSKPILLW LNNHRFPSSA  1140
VAMDLCLDAN VVAIWLQSTV TTSPMAPSPT SDFVGSPASV ETDCLVGSSG KPLHYSLGAS  1200
KLFGR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983555.1	0.0	homeobox-leucine zipper protein ROC3
Refseq	XP_004983556.1	0.0	homeobox-leucine zipper protein ROC3
Refseq	XP_022679045.1	0.0	homeobox-leucine zipper protein ROC3
Swissprot	A2ZAI7	0.0	ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A3L6THL5	0.0	A0A3L6THL5_PANMI; Homeobox-leucine zipper protein ROC3
STRING	Si034202m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7846	34	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7