![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00059.1.g01300.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 685aa MW: 74156.8 Da PI: 6.3185 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.4e-12 | 508 | 553 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Zjn_sc00059.1.g01300.1.sm.mk 508 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 553 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.6E-52 | 55 | 235 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.27E-18 | 503 | 573 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 504 | 553 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.81E-14 | 507 | 557 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.3E-18 | 508 | 575 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-10 | 508 | 553 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-16 | 510 | 559 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009269 | Biological Process | response to desiccation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:2000068 | Biological Process | regulation of defense response to insect | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 685 aa Download sequence Send to blast |
MNLWTDDNAS MMEAFMASAD LTWGTVGGDG SAGATPPPPF HQMPAAAPAF NQDTLQQRLQ 60 AIIEGSRETW TYAIYWQSSV DAGSGASLLG WGDGYYKGCD EDKRRQRPLT PADQVEQEHR 120 KRVLRELNSL ISGGAPAPDE AVEEEVTDTE WFFLVSMTQS FSHGSGLPAQ VFFSGQPNWI 180 SSGLSAAPCE RARQAYTFGL RTMVCVPVGT GVLELGSTDV IFHTAESMGK IRSLFGGGAG 240 PGSWQPQQQP AAGAEHAETD LWLADTPATD MKDTMSHPAA EISVSKPPQI HFENVTTTTS 300 TLTENPSPSV QAPSAPQPAV PVPPQRQQQQ QQSHVQQGPF RRELNFSEFA SNPSVVSGPP 360 FFKPESGEIL SFGADSTSRR NPSPAPPTTT APGSLFSQNT ATITAAAMND AKNNNKRSME 420 ATSRASNTNL HPAPTANEGM LSFSSAPTTR PSTGTGAPAK SESDHSDLDA SVREVESSRV 480 VAPPPPEAEK RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNVSKMDKA 540 SLLGDAISYI NELRGKLTAL ESDKETMQFQ IEALKKERDA RPAPQAGGFG HDAGPRCHAV 600 EIDAKILGLE AMIRVQCHKR NHPSARLMTA LRELDLDVYH ASVSVVKDLM IQQVAVKMAS 660 RIYSQDQLNA ALYSRLAEPG TVMGR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-60 | 48 | 235 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-60 | 48 | 235 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-60 | 48 | 235 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-60 | 48 | 235 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 489 | 497 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00084 | PBM | Transfer from AT1G32640 | Download |
![]() |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF061107 | 0.0 | AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001335485.1 | 0.0 | myc transcription factor 7 | ||||
Swissprot | Q336P5 | 0.0 | MYC2_ORYSJ; Transcription factor MYC2 | ||||
TrEMBL | A0A1E5W733 | 0.0 | A0A1E5W733_9POAL; Transcription factor MYC2 | ||||
STRING | GRMZM2G001930_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4452 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-140 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|