PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00059.1.g00540.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LSD | ||||||||
Protein Properties | Length: 76aa MW: 8346.85 Da PI: 7.7362 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 31.3 | 3.4e-10 | 8 | 32 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L+ P GAp RCa+C tV Zjn_sc00059.1.g00540.1.sm.mkhc 8 CSGCRTPLQLPHGAPCLRCAICGTV 32 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57889 | 6.8E-5 | 5 | 42 | No hit | No description |
TIGRFAMs | TIGR01053 | 2.3E-13 | 5 | 34 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.60.20 | 5.6E-5 | 7 | 38 | No hit | No description |
Pfam | PF06943 | 4.5E-9 | 8 | 32 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MTMMLIDCSG CRTPLQLPHG APCLRCAICG TVTHLKCPVY IHKGADNMYG KITGRDLDPQ 60 LTACDQFDVY AKPFSL |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP394 | 2 | 2 |