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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00059.1.g00310.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 21000.8 Da PI: 10.8472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.7e-13 | 147 | 187 | 2 | 45 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 +y+GVr+++ +g++ AeIrdp+ r++lg+++ta eA +a Zjn_sc00059.1.g00310.1.am.mk 147 RYRGVRQRP-WGKYTAEIRDPTRK--GPRVWLGTYDTAAEATRA 187 7********.**********8432..3*************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-8 | 147 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.938 | 147 | 187 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-19 | 147 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-13 | 147 | 187 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.91E-16 | 147 | 187 | No hit | No description |
SMART | SM00380 | 1.3E-7 | 147 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-10 | 148 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-10 | 171 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MATATTGQRT RKPLRISSPY AVAHHDHAST QVRSSRCRSL LLHPSVKFQA PSPTERVITS 60 MALQEHLDLI RAHLLEDHDV ATGATSSDAS ASPLTSPRGR RLQAPALSAP LPRRSATVMM 120 QQQWPAPLPQ VQRQERQCCC EEEDFRRYRG VRQRPWGKYT AEIRDPTRKG PRVWLGTYDT 180 AAEATRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 147 | 187 | 14 | 54 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094712 | 2e-39 | FP094712.1 Phyllostachys edulis cDNA clone: bphyem113i06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464924.1 | 3e-37 | ethylene-responsive transcription factor ERF104 | ||||
TrEMBL | A0A1Z5S8A1 | 8e-36 | A0A1Z5S8A1_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A317YE75 | 8e-36 | A0A317YE75_MAIZE; Ethylene-responsive transcription factor 5 | ||||
STRING | Sb01g028930.1 | 1e-36 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61600.1 | 3e-18 | ethylene response factor 104 |