PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00058.1.g02980.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 474aa    MW: 50012 Da    PI: 10.4215
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00058.1.g02980.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.91.9e-24255344190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 
                                     +fY+ Y+ +vGF+vrk++ ++sk++geit+r+f Cs+eg+r+  k + +++r + + +rtgC+a+l ++++k d+k ev
  Zjn_sc00058.1.g02980.1.am.mkhc 255 EFYRYYGWMVGFNVRKEYGNRSKKTGEITSRRFSCSREGHRAGAKAA-SNKRLPMPDSRTGCHAHLIIRRRKqDSKLEV 332
                                     6******************************************9998.9999******************999****** PP

                            FAR1  79 tkleleHnHela 90 
                                     + +e  HnH+l+
  Zjn_sc00058.1.g02980.1.am.mkhc 333 YVFEPRHNHPLF 344
                                     **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-21255344IPR004330FAR1 DNA binding domain
PROSITE profilePS508119.328270344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
RLSAIPRLSE PAPMDPTARV SDQVRPSSPS PEMNSSEADP HPAPPAAAAQ SAEPGSQGSI  60
PSPQKPNPTI PTPPPRNASV ATATAESSRN APEPTTATTA PSLKAPGVTT AAPCRKSSRA  120
ASTTTAATAK PSRNTPGPTT ATTAPSLKAL GVTTAAPSRK ASGATSTTAV ACLRNPSGAT  180
TSAAAVSRIP SAPATTTTTN AISGYPSVAT AAVAAQNPLG TAAVGSVPRG TAPTRPEDYT  240
PQMGMEFESE QEAYEFYRYY GWMVGFNVRK EYGNRSKKTG EITSRRFSCS REGHRAGAKA  300
ASNKRLPMPD SRTGCHAHLI IRRRKQDSKL EVYVFEPRHN HPLFDPSSMP CPFRGTAMPN  360
GVPTPDYLAN VGQENLREKS SKARTKESKK GQKNKIQPRN CIEKGLRKKQ KIHAEQSSMP  420
YPLSNASGQP GNALFQGIDL SNPTGPINYE GMHSGLHLSF TPELGFDLSH LSDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880889.12e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880890.12e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880891.12e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880892.12e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880893.12e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880894.12e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880895.12e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880896.12e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880897.12e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880898.12e-60protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A0D9ZKQ72e-93A0A0D9ZKQ7_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZKQ82e-93A0A0D9ZKQ8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G12170.13e-94(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15895914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.16e-17FAR1 family protein