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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00058.1.g02770.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 21998.5 Da PI: 4.515 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.3 | 1.7e-12 | 68 | 105 | 2 | 43 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43 +y+GVr+++ +g+W+AeIrdp + +r++lg+ a a Zjn_sc00058.1.g02770.1.sm.mk 68 KYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTEAEAAATA 105 8********.**********93....36****99655522222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-17 | 67 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.33E-14 | 68 | 96 | No hit | No description |
SMART | SM00380 | 1.7E-11 | 68 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-10 | 68 | 112 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.857 | 68 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-7 | 68 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-7 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-7 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MCEQSKSKTS MGCSEQALAV ENAVIVSALT HVVANGRAPA PELPMPWAAD SGGVVAQGQL 60 HAPAPARKYR GVRQRPWGKW AAEIRDPQKA ARVWLGTEAE AAATAAAAPA VLLESQAAGD 120 VMDYLEYSRI LEADDEPSAI VDGLLGGDVN GCFLGSWSIG TSPPSSSASG AGSATPLFPG 180 WSGGKQSSSS PFGEKGVAEE FLFHSGDENN CQL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003286 | 6e-31 | AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08. | |||
GenBank | AP014957 | 6e-31 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 6e-31 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684509.1 | 2e-48 | ethylene-responsive transcription factor RAP2-6-like | ||||
TrEMBL | A0A3L6QA86 | 1e-48 | A0A3L6QA86_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J15316.1.p | 5e-49 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14299 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07310.1 | 2e-16 | ERF family protein |