PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00058.1.g02750.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 417aa MW: 42904.8 Da PI: 5.6429

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00058.1.g02750.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1.1e-10	205	248	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ ++ L llP + +K +K +i+ +Av+YIk L+ Zjn_sc00058.1.g02750.1.sm.mk 205 TERERRKKMKNMYSSLHLLLPRL----PEKADKTTIVGEAVDYIKTLE 248 7*******************6....39**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.506	197	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-13	200	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.71E-10	202	252	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-12	202	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-8	205	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-6	205	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MSRPDANLPM EDVEGSSPGG VGSAGTSGSG SKPASPAINP FQDVRGTHDD EISPDEAMPA 60 VEGLAAMAGS DSNSLKLALA LAGEDSNGGS KPASPLAVQA HAGDVSGSKP AIPAALQVSA 120 GGASDKGKGK DELAGGEGAG DDVAGDSDGV TGSTSKSTKS SSDGDVQGDV VKDAPTPAVG 180 GSGGKSKGKG KDAVAEGDHA LHIWTERERR KKMKNMYSSL HLLLPRLPEK ADKTTIVGEA 240 VDYIKTLERT LHNLQNLKLE RSRAEQHGAG SSRAAPPPPM RHGVGAPPVP PASRETVLAG 300 MVVSNWNAQQ AAAAASPPHE PFQSWTAPNI SVSVSGNDGF ISVCMPKQPG AVTKALYVLE 360 KYRIDVITMN ILSDQNRSIF TINTTLNQAT GNIALELTTA EDRYKLAVSE LLQWTAN

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MSRPDANLPM EDVEGSSPGG VGSAGTSGSG SKPASPAINP FQDVRGTHDD EISPDEAMPA  60
VEGLAAMAGS DSNSLKLALA LAGEDSNGGS KPASPLAVQA HAGDVSGSKP AIPAALQVSA  120
GGASDKGKGK DELAGGEGAG DDVAGDSDGV TGSTSKSTKS SSDGDVQGDV VKDAPTPAVG  180
GSGGKSKGKG KDAVAEGDHA LHIWTERERR KKMKNMYSSL HLLLPRLPEK ADKTTIVGEA  240
VDYIKTLERT LHNLQNLKLE RSRAEQHGAG SSRAAPPPPM RHGVGAPPVP PASRETVLAG  300
MVVSNWNAQQ AAAAASPPHE PFQSWTAPNI SVSVSGNDGF ISVCMPKQPG AVTKALYVLE  360
KYRIDVITMN ILSDQNRSIF TINTTLNQAT GNIALELTTA EDRYKLAVSE LLQWTAN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684253.1	1e-56	uncharacterized protein LOC111257954

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	5e-36	bHLH family protein