PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00058.1.g02520.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 577aa    MW: 63006.6 Da    PI: 5.5368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00058.1.g02520.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.21.3e-82764672374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                    + Ll+ + a ++gd+++a a+L+ +  +as +g  p qR+aayf+ ALa+rl+r      + +++s+    + +e++ a+
  Zjn_sc00058.1.g02520.1.am.mk  76 MHRLLSSVAAGEAGDAQAAAAALQVVYRRASFRGgYPAQRVAAYFADALASRLLR------SPVAASPR--ATRTEQFLAY 148
                                   6889999999*********************99978*******************......33333333..35789999** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.....eg........ppslRiTgv 147
                                   ++f+++sP+++++h+taNqaI+ea+e    +r+H+iDfd+ +G+QWp+L+q+L++ +     ++        + slRiTg+
  Zjn_sc00058.1.g02520.1.am.mk 149 TMFYQTSPLYQLAHFTANQAIVEAFEAGgrRRLHVIDFDVLYGFQWPSLIQSLSDAAatstsSSsdgdgdepAVSLRITGF 229
                                   *************************9766699*********************987755555005556665355******* PP

                          GRAS 148 gspesgskeeleetgerLakfAeel.gvpfefnvlvakrledl.elee..LrvkpgEalaVnlvlqlhrlldesvsleser 224
                                   g     s++el++t+ rL++fA+ + +++fef+ +v + l++  + ++   +++ + +++Vnlv+  +r       ++s+ 
  Zjn_sc00058.1.g02520.1.am.mk 230 GT----SADELRQTEARLTRFASGCaNLRFEFEGIVDE-LTSRgRRHDavVKIEDDATVVVNLVFPDERDT----GTSSRE 301
                                   **....9***************97549*******7544.44432333311466679999*****9555443....334446 PP

                          GRAS 225 devLklvkslsPkvvvvveqeadhnse........sFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                                    ++L  v+sl+P  v +ve+   ++s+         +l rf+ +l+y++a+fdsl++ lp++s er  +E+  lg ei+n+
  Zjn_sc00058.1.g02520.1.am.mk 302 CSTLVRVRSLNPSFVFLVEKHDGTGSSatsrgptsLLLPRFTACLRYFAAVFDSLHQCLPADSAERLAIEKNHLGSEISNA 382
                                   78*****************997776555777888789******************************************** PP

                          GRAS 298 vacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.....yrve.eesgslv.lgWkdrpLvsv 370
                                   +a   ++ +  +h+  ++W+ ++e+aGF+ v+ls++a++qaklll++ ++ g     +rv   +sg ++ lgW+d +L+++
  Zjn_sc00058.1.g02520.1.am.mk 383 IASLDDHhHGDDHTAGATWKVMMEDAGFEGVKLSSRAVSQAKLLLKMKSGCGagsggFRVVdGDSGKAMsLGWRDSALITA 463
                                   **988874678899999****************************9976332234459988545666666*********** PP

                          GRAS 371 SaWr 374
                                   +aWr
  Zjn_sc00058.1.g02520.1.am.mk 464 TAWR 467
                                   ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.4549440IPR005202Transcription factor GRAS
PfamPF035144.7E-8076467IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MNLTLSLGVS NGGAAKKRKL WEGVVDDVED GGDRCRVIMR LLQARERMMA RLEQDDETWM  60
MVSDDGTGGA GGIRLMHRLL SSVAAGEAGD AQAAAAALQV VYRRASFRGG YPAQRVAAYF  120
ADALASRLLR SPVAASPRAT RTEQFLAYTM FYQTSPLYQL AHFTANQAIV EAFEAGGRRR  180
LHVIDFDVLY GFQWPSLIQS LSDAAATSTS SSSDGDGDEP AVSLRITGFG TSADELRQTE  240
ARLTRFASGC ANLRFEFEGI VDELTSRGRR HDAVVKIEDD ATVVVNLVFP DERDTGTSSR  300
ECSTLVRVRS LNPSFVFLVE KHDGTGSSAT SRGPTSLLLP RFTACLRYFA AVFDSLHQCL  360
PADSAERLAI EKNHLGSEIS NAIASLDDHH HGDDHTAGAT WKVMMEDAGF EGVKLSSRAV  420
SQAKLLLKMK SGCGAGSGGF RVVDGDSGKA MSLGWRDSAL ITATAWRRRR SSESFTEPLG  480
LLHLIQICSE DSAVETSAGK PRRCAWRTTT VSFRDDDDEE ETAALCLSIE TVRNPTQLDY  540
SFFDASKDAP NLGREFFIEL IDREQRLVHL VEQKETG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4411046953381Protein SCARECROW
5b3h_A5e-4411046952380Protein SCARECROW
5b3h_D5e-4411046952380Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975641.10.0DELLA protein DWARF8
TrEMBLK3Y6Y10.0K3Y6Y1_SETIT; Uncharacterized protein
STRINGSi009972m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.12e-44GRAS family protein