PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00058.1.g02240.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 164aa MW: 18808.1 Da PI: 4.3893

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00058.1.g02240.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	60.5	5.5e-19	7	86	1	89
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGf+F P+deelvv++L++k++ +++ ++i+ v +++++Pw+L+ k+ + ++wyfFs++ + +r+t +g Zjn_sc00058.1.g02240.1.sm.mkhc 7 LPPGFHFFPSDEELVVHFLHRKASLLPCQP-DIIPIVPLNQHDPWELNGKALEAGNQWYFFSNATR--------SRVTPNG 78 79***********************999.99**********966667789****9866........6899999 PP NAM 82 yWkatgkd 89 yW+ d Zjn_sc00058.1.g02240.1.sm.mkhc 79 YWNPICAD 86 99876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-24	4	99	IPR003441	NAC domain
PROSITE profile	PS51005	19.704	7	151	IPR003441	NAC domain
Pfam	PF02365	3.8E-12	8	87	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MVGPSDLPPG FHFFPSDEEL VVHFLHRKAS LLPCQPDIIP IVPLNQHDPW ELNGKALEAG 60 NQWYFFSNAT RSRVTPNGYW NPICADEMDC NNWVVCRVFD SSCGSKVSFH EEDTELSCLD 120 EVFLSLDDYD EVTDMTTTQH INLVQQRVHS SWCVEQFQKK QMAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-15	7	88	17	106	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-15	7	88	17	106	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-15	7	88	17	106	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-15	7	88	17	106	NO APICAL MERISTEM PROTEIN
3swm_A	1e-15	7	88	20	109	NAC domain-containing protein 19
3swm_B	1e-15	7	88	20	109	NAC domain-containing protein 19
3swm_C	1e-15	7	88	20	109	NAC domain-containing protein 19
3swm_D	1e-15	7	88	20	109	NAC domain-containing protein 19
3swp_A	1e-15	7	88	20	109	NAC domain-containing protein 19
3swp_B	1e-15	7	88	20	109	NAC domain-containing protein 19
3swp_C	1e-15	7	88	20	109	NAC domain-containing protein 19
3swp_D	1e-15	7	88	20	109	NAC domain-containing protein 19
4dul_A	1e-15	7	88	17	106	NAC domain-containing protein 19
4dul_B	1e-15	7	88	17	106	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823282.1	5e-70	NAC domain-containing protein 104-like isoform X2
Swissprot	Q8GWK6	1e-35	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0D9W574	4e-70	A0A0D9W574_9ORYZ; Uncharacterized protein
TrEMBL	A0A2T7CV59	1e-69	A0A2T7CV59_9POAL; Uncharacterized protein
STRING	Si011079m	1e-62	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-38	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]