PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00058.1.g01830.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 477aa    MW: 51808.3 Da    PI: 9.7421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00058.1.g01830.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.5e-521152441129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPtdeel+ +yLkkk+  +k++l evi+evd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat
  Zjn_sc00058.1.g01830.1.am.mk 115 VPPGFRFHPTDEELLLYYLKKKIGFEKFDL-EVIREVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRAT 194
                                   69****************************.99**************963433332566********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   ++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mhe+rle
  Zjn_sc00058.1.g01830.1.am.mk 195 TAGFWKATGRDKCIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEFRLE 244
                                   ***************9.8999***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-55106253IPR003441NAC domain
PROSITE profilePS5100553.877115307IPR003441NAC domain
PfamPF023651.5E-26116243IPR003441NAC domain
SuperFamilySSF1019416.28E-55295307IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAARPSYHAL ALIAIKRSVN KVRVEASGSL TGRRIWQLTE LPARARMAVP CVLRDHLLSP  60
STAAAAGVNS SRPRPPPPPR SCGPRSPASK LLKAEGSSSR GKGVVMAVFS SSNGVPPGFR  120
FHPTDEELLL YYLKKKIGFE KFDLEVIREV DLNKIEPWEL QERCRIGSAP QNEWYFFSHK  180
DRKYPTGSRT NRATTAGFWK ATGRDKCIRT SYRKIGMRKT LVFYRGRAPH GQKTDWIMHE  240
FRLEEADDVQ GGTSVSSLDF HSISFPRHAF MHAIRVSATK LGGSGAWADV ALFVQEDGWV  300
VCRVFKKKCF FKIGGGGEGS ASQGADAGGH LAASPPLGGH QSVLASHYIH PHHQYYHAAS  360
SYYSQMQVPA AYSHHVQVQD LLTNHRPTAD ATSYDFSGLP VEHPAAAGGL DVGSSDGVAA  420
DGAQMEGRDQ ASGAAEQQWQ AIDGFGNGAG NGAVQQMTGA MSSGQRGGEM DLWGYGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-4611530817166NO APICAL MERISTEM PROTEIN
1ut4_B6e-4611530817166NO APICAL MERISTEM PROTEIN
1ut7_A6e-4611530817166NO APICAL MERISTEM PROTEIN
1ut7_B6e-4611530817166NO APICAL MERISTEM PROTEIN
3swm_A8e-4611530820169NAC domain-containing protein 19
3swm_B8e-4611530820169NAC domain-containing protein 19
3swm_C8e-4611530820169NAC domain-containing protein 19
3swm_D8e-4611530820169NAC domain-containing protein 19
3swp_A8e-4611530820169NAC domain-containing protein 19
3swp_B8e-4611530820169NAC domain-containing protein 19
3swp_C8e-4611530820169NAC domain-containing protein 19
3swp_D8e-4611530820169NAC domain-containing protein 19
4dul_A6e-4611530817166NAC domain-containing protein 19
4dul_B6e-4611530817166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715420.0EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824150.10.0protein BEARSKIN1-like
TrEMBLA0A2T7CVD30.0A0A2T7CVD3_9POAL; Uncharacterized protein
STRINGPavir.Gb01599.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.19e-85NAC domain containing protein 70