PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00058.1.g00810.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 527aa MW: 57271.6 Da PI: 8.2125

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00058.1.g00810.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.2	5.7e-52	11	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+++yL++kv++ + + ++ e+d++k+ePw+Lp+ +k +ekewyfF+ +d+ky+tg r+nrat++g Zjn_sc00058.1.g00810.1.am.mk 11 LPPGFRFHPTDEELITHYLARKVADPCFAA-LAVGEADLNKSEPWELPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAG 90 79*********************99888.67***********8888899********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkdk++++ ++ lvg kktLvfy+grapkgek+ Wvmheyrl Zjn_sc00058.1.g00810.1.am.mk 91 YWKATGKDKDIFR-GKVLVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 136 *********.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-62	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	58.018	11	161	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	12	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MEQELHQPME LPPGFRFHPT DEELITHYLA RKVADPCFAA LAVGEADLNK SEPWELPSLA 60 KMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDKD IFRGKVLVGS KKTLVFYTGR 120 APKGEKSGWV MHEYRLHGKP VNGVPRALSK NEWVLCRVFK KSLPGLAPLL AAAAAAKKGA 180 GEMARMDDMV LAHLPPLMDM SGSATVNPEA AHVTCFSNAL EGQFFNHTVP QTAANSGTDD 240 HLGLASSPFF PQYGQLHQGV SLVQLLESNG YDVGLADDEG KPSGLAPPPC KQGEREWLSA 300 SQDTGLTSDV NAEISSSYGP KFDQDRLWGY WQSRTVNTNA RSRGRHSQTP KPPAELDSDA 360 SSLATPALEL VGFDPGPDET SYSLHACLSR QCRATRRRRP PTGLIDGGSS ARGAGASRVA 420 VSWNRSFLDG AGSRKGEPID QRWLARAIDD SNGARRANGA GPPAPPPASG SFKNSGIAFC 480 LVCPYLPDIF ASGIQLAAAD CLRTGAGHEL RFDMVSSDRR LHIYFRC

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MEQELHQPME LPPGFRFHPT DEELITHYLA RKVADPCFAA LAVGEADLNK SEPWELPSLA  60
KMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDKD IFRGKVLVGS KKTLVFYTGR  120
APKGEKSGWV MHEYRLHGKP VNGVPRALSK NEWVLCRVFK KSLPGLAPLL AAAAAAKKGA  180
GEMARMDDMV LAHLPPLMDM SGSATVNPEA AHVTCFSNAL EGQFFNHTVP QTAANSGTDD  240
HLGLASSPFF PQYGQLHQGV SLVQLLESNG YDVGLADDEG KPSGLAPPPC KQGEREWLSA  300
SQDTGLTSDV NAEISSSYGP KFDQDRLWGY WQSRTVNTNA RSRGRHSQTP KPPAELDSDA  360
SSLATPALEL VGFDPGPDET SYSLHACLSR QCRATRRRRP PTGLIDGGSS ARGAGASRVA  420
VSWNRSFLDG AGSRKGEPID QRWLARAIDD SNGARRANGA GPPAPPPASG SFKNSGIAFC  480
LVCPYLPDIF ASGIQLAAAD CLRTGAGHEL RFDMVSSDRR LHIYFRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	9	161	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	9	161	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	9	161	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	9	161	15	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	9	162	18	169	NAC domain-containing protein 19
3swm_B	1e-49	9	162	18	169	NAC domain-containing protein 19
3swm_C	1e-49	9	162	18	169	NAC domain-containing protein 19
3swm_D	1e-49	9	162	18	169	NAC domain-containing protein 19
3swp_A	1e-49	9	162	18	169	NAC domain-containing protein 19
3swp_B	1e-49	9	162	18	169	NAC domain-containing protein 19
3swp_C	1e-49	9	162	18	169	NAC domain-containing protein 19
3swp_D	1e-49	9	162	18	169	NAC domain-containing protein 19
4dul_A	1e-49	9	161	15	165	NAC domain-containing protein 19
4dul_B	1e-49	9	161	15	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060770	1e-166	BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds.
GenBank	BT063543	1e-166	BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBank	BT084493	1e-166	BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
GenBank	JX428530	1e-166	JX428530.1 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975858.1	1e-156	NAC domain-containing protein 92 isoform X1
Swissprot	Q9FLJ2	2e-89	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3G1VCF2	0.0	A0A3G1VCF2_9POAL; NAC domain transcription factor
STRING	Pavir.Gb01850.1.p	1e-156	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	7e-89	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]