PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g04230.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 240aa    MW: 25549.5 Da    PI: 4.6693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g04230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1763112255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +++g
  Zjn_sc00056.1.g04230.1.am.mk  63 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFHDPEMAARAHDVAAIAIKG 112
                                   69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.2663120IPR001471AP2/ERF domain
SMARTSM003802.0E-3663126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3163121IPR001471AP2/ERF domain
PfamPF008474.5E-1063112IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2163121IPR016177DNA-binding domain
CDDcd000184.86E-3164122No hitNo description
PRINTSPR003673.4E-96475IPR001471AP2/ERF domain
PRINTSPR003673.4E-986102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEQEQASSLA DQAVSDGGTC SGNSSSSDSL MNASSPTSSG DDAGSVTASG GKKRPRRDLK  60
HPTYRGVRMR AWGKWVSEIR EPRKKSRIWL GTFHDPEMAA RAHDVAAIAI KGRNAHLNFP  120
ELAGELPRAA SAAPRDVQAA AALAAATVAS PDPAPRCHDE EELLARGQAT PECDVVSNAA  180
PFGGDMGLLD CTFLDVPDAL LDFGHMFSPP PPLPSCCGSP WDDIIADDFC FEEPLLLWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-15601201172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278643e-95KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164544.11e-74ethylene-responsive transcription factor ERF039-like
TrEMBLA0A060D2114e-74A0A060D211_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G028969_P017e-75(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.18e-29ERF family protein