PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g04220.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 428aa    MW: 45598.8 Da    PI: 8.3424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g04220.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-19105155155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Zjn_sc00056.1.g04220.1.am.mk 105 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 155
                                   57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-13105155IPR001471AP2/ERF domain
CDDcd000181.48E-30105164No hitNo description
SMARTSM003805.0E-37106169IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21106164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-32106164IPR001471AP2/ERF domain
PROSITE profilePS5103224.118106163IPR001471AP2/ERF domain
PRINTSPR003671.3E-10107118IPR001471AP2/ERF domain
PRINTSPR003671.3E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MESVASHAPT TSSSSSSSSY CSLVRGPEEL SKKNPKPTTK RKRAASPHCC QLEGEANNAT  60
VVPNGHGEES SSCCSTDDHA GSGDNNNNQA PAASSATRRS GFKHPSYRGV RRRSWGKWVS  120
EIREPRKKSR IWLGTFPTAE MAARAHDVAA LAIKGRAAHL NFPDRAHELP RPASTSPADI  180
QAAAAQAAAA AQCDAASSSA ELPSSPAAES AETAGPETVR ADSNGAQEHA LFDLPDLLLD  240
LRDGLWWSPV WPGPEAMAAE EYDVVGMQEP LLWIEDLGRA NPTGTHTAMR GNDDRLTWPE  300
GQEGVDRSNT MPLLPVAQRR EPCLLSISRA DALAGLSIGG ARTPPTHDYV KCTTGRPDRR  360
LPGSPVAAWS SRDRRRRSGS GSRVARGTVV ATCEWRVPFV ASSVSLRGEF GPASLAVLLP  420
GAPNRMVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1798163672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5761311e-113KM576131.1 Oryza rufipogon dehydration responsive element binding protein 4-2 (DREB4-2) gene, promoter region and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824727.12e-69ethylene-responsive transcription factor ERF024-like
TrEMBLA0A1E5VNF59e-86A0A1E5VNF5_9POAL; Ethylene-responsive transcription factor ERF038
STRINGPavir.J17742.1.p3e-72(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-37ERF family protein