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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00056.1.g04020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 311aa MW: 33444.3 Da PI: 6.3069 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 4e-20 | 158 | 208 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+++tae+Aa a+++a+ +++g Zjn_sc00056.1.g04020.1.am.mk 158 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDTAEDAALAYDRAAYRMRG 208 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.71E-29 | 157 | 216 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 157 | 216 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.25 | 158 | 216 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-23 | 158 | 218 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-38 | 158 | 222 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-14 | 158 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 159 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 182 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MLLNPVSEAL VRDSIRQHLL EESAAVVKEE EATTRPAYRR SASFGSLVAD QWSDSLPFRT 60 DDADDMVVFG ALRDAFAYGW LPDGSFAAVK PEPLPSPDCS SCSYDRSYSF GVAEPPLTPG 120 SSCTTDQATP KREEPEQEQV QEQEQEQAAA AAVARGKHYR GVRQRPWGKF AAEIRDPAKN 180 GARVWLGTYD TAEDAALAYD RAAYRMRGSR ALLNFPLRIG SEIAAAAAAA AGHKRPSPKP 240 ATSSDSSSFS SSSSSSGSPK RRKRGEAAAA AMSLPLVPPP SQLSRPAQPW FPAVPAEQVV 300 AIAPRVEQLV I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-39 | 154 | 221 | 1 | 68 | ATERF1 |
3gcc_A | 1e-39 | 154 | 221 | 1 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243188 | 1e-101 | AK243188.1 Oryza sativa Japonica Group cDNA, clone: J100039E18, full insert sequence. | |||
GenBank | AL607006 | 1e-101 | AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence. | |||
GenBank | AP014960 | 1e-101 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-101 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | EF061888 | 1e-101 | EF061888.1 Oryza sativa (japonica cultivar-group) development related ERF protein (DRE) mRNA, complete cds. | |||
GenBank | KJ727518 | 1e-101 | KJ727518.1 Zea mays clone pUT5377 AP2-EREBP transcription factor (EREB198) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826088.1 | 1e-119 | ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A0A9QX36 | 1e-120 | A0A0A9QX36_ARUDO; Uncharacterized protein | ||||
STRING | Traes_2BL_CF47A74CC.2 | 1e-121 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3800 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 3e-36 | ethylene responsive element binding factor 1 |