PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g00160.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 708aa    MW: 75396.3 Da    PI: 9.2153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g00160.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30183240260
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g Hnh+k
  Zjn_sc00056.1.g00160.1.am.mk 183 EDGYSWRKYGQKQVKHSEYPRSYYKCTHPNCQVKKKVERSH-EGHVTEIVYKGMHNHPK 240
                                   8****************************************.***************85 PP
2WRKY105.52.7e-33390448159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d + v++tYeg+Hnhe
  Zjn_sc00056.1.g00160.1.am.mk 390 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLQSVITTYEGKHNHE 448
                                   59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-28173241IPR003657WRKY domain
PROSITE profilePS5081122.641177241IPR003657WRKY domain
SuperFamilySSF1182904.84E-25178241IPR003657WRKY domain
SMARTSM007743.6E-34182240IPR003657WRKY domain
PfamPF031061.5E-23183239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-37375450IPR003657WRKY domain
SuperFamilySSF1182904.45E-29382450IPR003657WRKY domain
PROSITE profilePS5081137.149385450IPR003657WRKY domain
SMARTSM007743.0E-38390449IPR003657WRKY domain
PfamPF031061.7E-25391448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MDGHVAKEEW KDQNPSREAL MPSVLTGAFP PDTTGRDGNE GANFGFEKHG FAANSPQEGG  60
RSLPMTPQFG QKTGSSSSFA ERVHARTGFR VPKLNVLVST ATGADNAVPG ASSPYLTIPP  120
GLSPATLLES PVFISNAMHL NVGQPIQKSG SKQSRPAPDP VTGTEHLSPP DHSQQTEETS  180
PAEDGYSWRK YGQKQVKHSE YPRSYYKCTH PNCQVKKKVE RSHEGHVTEI VYKGMHNHPK  240
PAQSRRPGVP AVHSFGDAQV NASDSPGSQA KNPWQNNAGV QDSRGDGVDP TSSPSVPGEL  300
CDSSPSMQVR DGARFGSPGG VDVTSAVSDE VDGDRVTHGS LSQGGADAEG DELESKRRKL  360
ESYAIDMGCA SRAVREPRVV IQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHPG  420
CSVRKHVERA SHDLQSVITT YEGKHNHEVP AARNSAHPSS AAPGAAMAAA GHHRAGARLP  480
DHHHSSVQDT GLMRLGGCAF GGLPPRDPLV PMANYPYATF GASLPSLPML PGPLGPVEGL  540
KVPMLATSIH RPLLRHRQAI EAAGLVEVKR EAGAAGSPGG DGSGNDNADA AATVYQQLVQ  600
RRRMQLGHKM PGCQQPSEKA FAGKPEPVPF SRAATGDIAA VVMIDAGQMA SSITQLAAAG  660
HPSRFRTRRT LPRRVLHLRL PPLPRCQGPA LPGEASPPKP SESVKTKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-36174451878Probable WRKY transcription factor 4
2lex_A8e-36174451878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823122.10.0probable WRKY transcription factor 2
SwissprotO655901e-106WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A3L6PRS40.0A0A3L6PRS4_PANMI; Putative WRKY transcription factor 34
STRINGGRMZM5G816457_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.11e-106WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]