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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00053.1.g02520.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 524aa MW: 56000.9 Da PI: 10.5639 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.5e-19 | 349 | 399 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+++ta eAa+a+++a+ +l+g Zjn_sc00053.1.g02520.1.am.mk 349 RYRGVRQRP-WGKYAAEIRDPAQ--KGARVWLGTYDTAVEAARAYDRAAFRLRG 399 7********.**********944..44*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-22 | 349 | 408 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.6E-13 | 349 | 399 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-38 | 349 | 413 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 349 | 408 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.06E-28 | 349 | 408 | No hit | No description |
PROSITE profile | PS51032 | 24.619 | 349 | 407 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-13 | 350 | 361 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-13 | 389 | 409 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MTTGQRPWRE AVWMPPDRLG YSGQGWSGVD GGRKPRVVAL ALTERSMPSP SRSMRPDQGF 60 YVLLETGGTR ERGEQGQPLL RQRTASGSQQ PQPCLAGHVQ RRLSGWQSGS AGRPCSGSGP 120 GARCAAVRAS RVWPSTARTA DPSTPSFSHS ASCGRPLTTK RVSERTSEEA VAACARAVEP 180 TTPGRLASDV SATTSPWVPP GFVRRTRKPP RSTVMSPYLL AAASYIAVGG RVPQPLFNAD 240 ARNAAPAGPC SSPPPTPQRQ VSSSHLKHLD LIRAHLLEDG HDVAAGAVSS DLDGSTASPS 300 PSPPGRRQVP ALSVTLPPRP ATVVVHQQWA AAPSLQVRHQ QGQEDDFRRY RGVRQRPWGK 360 YAAEIRDPAQ KGARVWLGTY DTAVEAARAY DRAAFRLRGS KAILNFPNEV AFGAAARWAA 420 PSAASLNNSY AAAAGNKRTR SPEQSLQWEA AESLRDVKKE RVQEPAASCD YWAAGVAVAP 480 APASGGADFF WEEVEELKGT LCSLPLLSPL SPHPHVAFPQ LSVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-27 | 348 | 413 | 4 | 69 | ATERF1 |
3gcc_A | 9e-27 | 348 | 413 | 4 | 69 | ATERF1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079890 | 5e-89 | AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence. | |||
GenBank | AC084763 | 5e-89 | AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 5e-89 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341826 | 5e-89 | AY341826.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP28 mRNA, complete cds. | |||
GenBank | CP012618 | 5e-89 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-22 | ERF family protein |