PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00053.1.g02030.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 694aa MW: 73141.8 Da PI: 9.0813

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00053.1.g02030.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00016	440	462	33	55
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 + s++ +Ka++L ++++Y+k+Lq Zjn_sc00053.1.g02030.1.am.mk 440 NESERTDKASMLDEVIDYLKQLQ 462 57899*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.2E-4	440	467	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-5	440	479	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MWHVEGLSTD RAAWHAAKFW ELYQGPEQKY ARPPCAEAAA SVQKSSPETA PARPMMATGI 60 GKGGSAVMWK PRRLRARLRL TSPGPLAASP PSVPSLSLPP PPPIRTPACA IERAISNRSM 120 VTSRAHPSVL KCPRPPRVPR ARNGTSTRAL LVHTLACRAR PSLPAHAGVV PPSATSHAIG 180 RGGGVEMNQC VPSWDLDDPA AGSVPINKVS AAAGAYHRAA VAGAGDSLSP LVVPMSDQYY 240 EGSISSHGLL NRPTPKYPPA APSHQLQAIG GGGDGGSGDH ETLEAVVGEA ATRSHFPQPS 300 FPATPWLGVG VPLHADALVP CARDEQAAGE ETPRKRARVV GDGGLVCTSQ GSVASGRRGE 360 SAMQALDAAC GTDVCGFTTM TNNSTSLDRE ENKGSPDTEN TSIGGGANGL CDEGENVVND 420 ELAMRSSIST KRSRAAAIHN ESERTDKASM LDEVIDYLKQ LQAQAQVQVM SRISSMMMPM 480 AMPQLQMSVM AQMAQMAQMA QMAQGMMNMG SLAQPGYVPP PMMHSPPPFV PLPWDTGATG 540 ASSGAGAVGD HAARPGGSAM ADAFAAFLAC QQAQQNGQQQ SGSMEAYNRM LAMCQKLNQQ 600 QYQCQPSSSK HLVLHHGARR RRHKEKAMAC SSSVDRDRWA VNPEDGTRTP AQLLPSAIQI 660 PAVIMPGTTT RAQSRHESNR GRRGPVAGTH GQRP

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MWHVEGLSTD RAAWHAAKFW ELYQGPEQKY ARPPCAEAAA SVQKSSPETA PARPMMATGI  60
GKGGSAVMWK PRRLRARLRL TSPGPLAASP PSVPSLSLPP PPPIRTPACA IERAISNRSM  120
VTSRAHPSVL KCPRPPRVPR ARNGTSTRAL LVHTLACRAR PSLPAHAGVV PPSATSHAIG  180
RGGGVEMNQC VPSWDLDDPA AGSVPINKVS AAAGAYHRAA VAGAGDSLSP LVVPMSDQYY  240
EGSISSHGLL NRPTPKYPPA APSHQLQAIG GGGDGGSGDH ETLEAVVGEA ATRSHFPQPS  300
FPATPWLGVG VPLHADALVP CARDEQAAGE ETPRKRARVV GDGGLVCTSQ GSVASGRRGE  360
SAMQALDAAC GTDVCGFTTM TNNSTSLDRE ENKGSPDTEN TSIGGGANGL CDEGENVVND  420
ELAMRSSIST KRSRAAAIHN ESERTDKASM LDEVIDYLKQ LQAQAQVQVM SRISSMMMPM  480
AMPQLQMSVM AQMAQMAQMA QMAQGMMNMG SLAQPGYVPP PMMHSPPPFV PLPWDTGATG  540
ASSGAGAVGD HAARPGGSAM ADAFAAFLAC QQAQQNGQQQ SGSMEAYNRM LAMCQKLNQQ  600
QYQCQPSSSK HLVLHHGARR RRHKEKAMAC SSSVDRDRWA VNPEDGTRTP AQLLPSAIQI  660
PAVIMPGTTT RAQSRHESNR GRRGPVAGTH GQRP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361420	1e-50	AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBank	AK367814	1e-50	AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660002.1	1e-107	transcription factor UNE10 isoform X2
TrEMBL	A0A368SN18	1e-105	A0A368SN18_SETIT; Uncharacterized protein
STRING	OPUNC10G16560.1	1e-105	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7474	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-10	bHLH family protein