PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00053.1.g00700.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 446aa    MW: 48660.2 Da    PI: 12.302
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00053.1.g00700.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.3e-30343393151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Zjn_sc00053.1.g00700.1.am.mk 343 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 393
                                   79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.567335395IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-40335394IPR002100Transcription factor, MADS-box
PROSITE patternPS003500337391IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-30337357IPR002100Transcription factor, MADS-box
CDDcd002651.30E-36337393No hitNo description
SuperFamilySSF554551.06E-27337398IPR002100Transcription factor, MADS-box
PfamPF003191.0E-26344391IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-30357372IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-30372393IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDSPEIGLAF LQYAGRPAGR LKMHWSQRSN GSGRSLHCTG QRGTINGDFA AGAGLEKART  60
APSDDEVRHS CLRVAIRSPL VRTEAGPGRP TGSPPSYAPA GPALSGISTV VHGPTPHLLW  120
ALSAAFRRST KQWTRNRIRV AALHRHRLAQ PPIRSPINPP LLLPRKARNT NPFAAAPGPG  180
ASVFRPPTAT AKGDRTTAAG ALSCPGRFSP RRVNPSRDRL LYLADAMPPA FRLHAAGPRL  240
ASSTRCAAPR PRNGGLRLRV IGSSSISLPA FHRYKIHRAR VYSSFQASGR GSEHQKGNPR  300
RGGGRAACLP ALPFLVSVLR SQICLVLRRR GSARMVRGRT ELKRIENATS RQVTFSKRRN  360
GLLKKAFELS VLCDAEVALI VFSPRGKLYE FASAARCVSR LVSLPHESAD CKSIRTPFRS  420
VPFRTRARRC YLSSLLTLWL FERSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15335408178MEF2 CHIMERA
6byy_B2e-15335408178MEF2 CHIMERA
6byy_C2e-15335408178MEF2 CHIMERA
6byy_D2e-15335408178MEF2 CHIMERA
6bz1_A2e-15335408178MEF2 CHIMERA
6bz1_B2e-15335408178MEF2 CHIMERA
6bz1_C2e-15335408178MEF2 CHIMERA
6bz1_D2e-15335408178MEF2 CHIMERA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648231e-74BT064823.1 Zea mays full-length cDNA clone ZM_BFb0180I10 mRNA, complete cds.
GenBankEU9610131e-74EU961013.1 Zea mays clone 230445 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6555922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-29AGAMOUS-like 14