PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00052.1.g01160.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 119aa MW: 12435.9 Da PI: 5.5676 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37 | 5.8e-12 | 60 | 84 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p Zjn_sc00052.1.g01160.1.sm.mkhc 60 EPDCSYYMRTGLCRFGMTCKFNHPP 84 799********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.1E-5 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 60 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 62 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-5 | 63 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MAALSAGAGA GGGGGEGSSS AAAASATIET HGVHEVAEAM WQMNLGEAAE SGPYPERVGE 60 PDCSYYMRTG LCRFGMTCKF NHPPDRKLAV AAARMKGEYP QRTSQPECQL DGLMKHSLD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018914 | 2e-72 | BT018914.1 Zea mays clone EL01T0403G12.d mRNA sequence. | |||
GenBank | BT040571 | 2e-72 | BT040571.1 Zea mays full-length cDNA clone ZM_BFc0101B05 mRNA, complete cds. | |||
GenBank | BT067452 | 2e-72 | BT067452.1 Zea mays full-length cDNA clone ZM_BFc0051N01 mRNA, complete cds. | |||
GenBank | JX428473 | 2e-72 | JX428473.1 Zea mays subsp. mays clone pUT3069 C3H11 C3H type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141157.1 | 2e-45 | Zinc finger CCCH domain-containing protein 33 | ||||
Swissprot | Q2R4J4 | 9e-44 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A3L6Q1A7 | 3e-44 | A0A3L6Q1A7_PANMI; Zinc finger CCCH domain-containing protein 63 isoform X1 | ||||
TrEMBL | I1R036 | 2e-44 | I1R036_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0112800.1 | 3e-45 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25763 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 6e-34 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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