PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00052.1.g01150.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 77aa MW: 8886.48 Da PI: 9.2586 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34 | 4.8e-11 | 11 | 30 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ Zjn_sc00052.1.g01150.1.am.mkhc 11 YYLKTGTCKFGATCKFHHPR 30 8*****************96 PP | |||||||
2 | zf-CCCH | 18.6 | 3.4e-06 | 52 | 70 | 3 | 21 |
S---SGGGGTS--TTTTT- CS zf-CCCH 3 telCrffartGtCkyGdrC 21 +++C ++ rtG+Ck+G +C Zjn_sc00052.1.g01150.1.am.mkhc 52 EKECAYYIRTGQCKFGMTC 70 679*************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00642 | 5.5E-9 | 11 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.577 | 11 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 11 | 31 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 11 | 32 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.155 | 49 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 77 aa Download sequence Send to blast |
MVSAIIIYLL YYLKTGTCKF GATCKFHHPR EKAGMANRVQ WNSLGYPLRP NEKECAYYIR 60 TGQCKFGMTC SDWLVVL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141157.1 | 7e-34 | Zinc finger CCCH domain-containing protein 33 | ||||
Refseq | XP_029122312.1 | 7e-34 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_029122313.1 | 6e-34 | zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
Swissprot | Q2R4J4 | 5e-33 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A0E0F5M4 | 4e-33 | A0A0E0F5M4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0MFC8 | 7e-33 | A0A0E0MFC8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G11150.1 | 1e-33 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP34972 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 3e-31 | zinc finger protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|