PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00051.1.g02660.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 549aa    MW: 60202.5 Da    PI: 8.7892
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00051.1.g02660.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.2e-094765102155
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   + +yps++e+  LA+++gL+++q+ +WF N+R ++
  Zjn_sc00051.1.g02660.1.am.mk 476 EWPYPSETEKIALAQSTGLDQKQINNWFINQRKRH 510
                                   669*****************************885 PP
2ELK37.16.8e-13430451122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK qLl+KYsgyL+sL+qEFs
  Zjn_sc00051.1.g02660.1.am.mk 430 ELKYQLLKKYSGYLSSLRQEFS 451
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-20257301IPR005540KNOX1
PfamPF037901.7E-21258299IPR005540KNOX1
SMARTSM012564.8E-26305356IPR005541KNOX2
PfamPF037913.5E-22311353IPR005541KNOX2
PROSITE profilePS5121311.627430450IPR005539ELK domain
PfamPF037897.2E-10430451IPR005539ELK domain
SMARTSM011881.2E-7430451IPR005539ELK domain
PROSITE profilePS5007112.908450513IPR001356Homeobox domain
SuperFamilySSF466893.04E-19451525IPR009057Homeodomain-like
SMARTSM003893.8E-13452517IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-28455514IPR009057Homeodomain-like
CDDcd000861.13E-12462514No hitNo description
PfamPF059201.8E-16470509IPR008422Homeobox KN domain
PROSITE patternPS000270488511IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MVLCVEELVV KHTDCTVGRG GMARPHEQDR VKKIELALAP EPLANRAHLT LVLNKYSASI  60
SPPVSSPVRF DARKGVATST DAHIGPDCPL ALAHTFPFSV HTPPSNLINI SLPSTLSLPL  120
PAALHGHDRH YWCGEKREKL QSSPGPAGRL LCPPNFSVRL ASARFWPVYF MDQSFVNLGA  180
GGCSSGASNS KPAAPGSSSF LQLPLSSTTV AAPAGVAYYG APLTLLHQVA GPSPAASQSQ  240
SQYGRHAEMS MSPAEVGAVK AKIVAHPQYS ALLAAYLDCQ KVGAPPDVVE KLTATAAKLD  300
ARPPPNRHEP RDPELDQFME AYCNMLAKYR EELRRPINEA TEFIKRLEAQ LDSVSGATAT  360
AARLSLAGES LPGLRFHLSY GTVRSRVSSF RSSLDLDGKS EGAGSSEDDM DASGRGNEPP  420
EIDPRAEYKE LKYQLLKKYS GYLSSLRQEF SKKKKKGKLP KEARQKLLHW WELHYEWPYP  480
SETEKIALAQ STGLDQKQIN NWFINQRKRH WKPSEDMPFV MMEGFHPQNS AAFYLDGPFM  540
ADGMYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940391e-168FP094039.1 Phyllostachys edulis cDNA clone: bphyem209e11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955415.11e-174homeobox protein rough sheath 1
SwissprotO650341e-151KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-151KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A368PV501e-173A0A368PV50_SETIT; Uncharacterized protein
STRINGPavir.Bb00225.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-93KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]