PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00051.1.g02620.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 430aa MW: 47645.7 Da PI: 4.6878

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00051.1.g02620.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39	1e-12	11	59	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k++en++ r+ t+ kRr g+ K LS+L++a++av++ +++gk+ + Zjn_sc00051.1.g02620.1.am.mk 11 KFVENDRDRSLTYFKRRSGLYKSITDLSTLTGAKAAVVVEGESGKISSF 59 789******************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.4E-11	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.315	3	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-8	5	25	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.03E-16	5	76	No hit	No description
SuperFamily	SSF55455	2.35E-16	8	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-14	13	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-8	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-8	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MNRRPRRSGI KFVENDRDRS LTYFKRRSGL YKSITDLSTL TGAKAAVVVE GESGKISSFG 60 SPSANAVVEC FLSNSSPANI YVDEAEMARI TYLQDELFHV EKEKTMEEKR VKESKARVKK 120 IEETSRVGKL LFQDVEKLGA EELSELLQHL ARVQEDIDAR VYADQQVEVS GQQGDPSVPA 180 FSSSSWLPQI NTPPRHLPWA PLHAPSSLHP QSPWGPFLHS SMSYSSLLPP AHIPPPAHTP 240 AIHHQAPIMP PPPTSEAHQY GYYFSQEQPL PQADLDPTYA YAPNVNYFDP VVPLDQNPSA 300 YIQNFNFNPV PPLDQNPAAY ARNFYFDPVL PPQTNQQAIS QNFAADGQPP DVQWTPTSPG 360 NEYYNYQTLY VQMGLTDDNG VQAAAAGGDQ EHVPDPSDGL HQEDDDGSLT MNLWDYSPFR 420 GENPGGGAGN

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MNRRPRRSGI KFVENDRDRS LTYFKRRSGL YKSITDLSTL TGAKAAVVVE GESGKISSFG  60
SPSANAVVEC FLSNSSPANI YVDEAEMARI TYLQDELFHV EKEKTMEEKR VKESKARVKK  120
IEETSRVGKL LFQDVEKLGA EELSELLQHL ARVQEDIDAR VYADQQVEVS GQQGDPSVPA  180
FSSSSWLPQI NTPPRHLPWA PLHAPSSLHP QSPWGPFLHS SMSYSSLLPP AHIPPPAHTP  240
AIHHQAPIMP PPPTSEAHQY GYYFSQEQPL PQADLDPTYA YAPNVNYFDP VVPLDQNPSA  300
YIQNFNFNPV PPLDQNPAAY ARNFYFDPVL PPQTNQQAIS QNFAADGQPP DVQWTPTSPG  360
NEYYNYQTLY VQMGLTDDNG VQAAAAGGDQ EHVPDPSDGL HQEDDDGSLT MNLWDYSPFR  420
GENPGGGAGN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3089	22	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	1e-12	M-type_MADS family protein