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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00051.1.g02410.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 463aa MW: 49449.1 Da PI: 10.2938 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.2 | 6e-18 | 314 | 360 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdr N+++ L+el+P++ K +Ka+iL +A+eY+ksLq Zjn_sc00051.1.g02410.1.am.mk 314 VHNMSERRRRDRFNEKIRALQELVPHC-----SKTDKASILDEAIEYLKSLQ 360 6*************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.78E-18 | 305 | 364 | No hit | No description |
SuperFamily | SSF47459 | 7.72E-21 | 308 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.419 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-21 | 314 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-15 | 314 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.6E-18 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MVTGLSVTAS PLVASRGPCV AGGGMAASTT YSRCVRCVIK PRQPTGSRVR PLNRRTQFVG 60 SLFIAGSCRD KLQRTLASST RRGESFVSTM FVIIFSCSLL LFVTESFMGI KYLGAAGSKK 120 WLLAMDGGAR PAPSQKRPFP PDGELVELLW RNGAVVARSQ AQGHNYHQRE VVRRGPSGGN 180 TGASGVTEDA AWLPDPNALG GDTDTAASAF WPPPPATSGG AGSSRTTGGE VGSSFCGSNN 240 LVTAALLRTG ASTSGWTESG ALLRRSRDEV DGRGEVVFSI LATGYACFDS VRLDADFDET 300 RRPASKRRTR SAEVHNMSER RRRDRFNEKI RALQELVPHC SKTDKASILD EAIEYLKSLQ 360 MQVQIMWMTT GMSPMMIPGG HQQLMGTGLN SSSMPPAAHV LSQMQRVAPF MNNPLPSQMP 420 GVSSAATGAQ NAASQVQKNR VGDPRNPFFH PDDAPAATAE AIV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 305 | 322 | KRRTRSAEVHNMSERRRR |
2 | 318 | 323 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955437.1 | 1e-125 | transcription factor PIF4 | ||||
Swissprot | Q10CH5 | 5e-68 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | K3ZTU8 | 1e-134 | K3ZTU8_SETIT; Uncharacterized protein | ||||
STRING | Si030028m | 1e-135 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3174 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.4 | 2e-34 | phytochrome interacting factor 3-like 6 |
Publications ? help Back to Top | |||
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