PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00051.1.g00100.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 610aa    MW: 65452.4 Da    PI: 5.1546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00051.1.g00100.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.5e-184796255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Zjn_sc00051.1.g00100.1.am.mk 47 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 96
                                  799******.7*********32...35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1847104IPR016177DNA-binding domain
PfamPF008471.8E-124796IPR001471AP2/ERF domain
CDDcd000183.96E-3047103No hitNo description
PROSITE profilePS5103219.83647104IPR001471AP2/ERF domain
SMARTSM003801.2E-3347110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2747104IPR001471AP2/ERF domain
PRINTSPR003673.6E-74859IPR001471AP2/ERF domain
PRINTSPR003673.6E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MELQFQKPQS HAQQQQCQYQ AVSVVAKETA GKLSRARSKC GGGGGGKFVG VRQRPSGRWV  60
AEIKDTTQKI RMWLGTFETA EEAARAYDEA ACLLRGANTR TNFAAAGGAG SAPPVSPLAS  120
RIRALLHHKK LKKTVARQPD VAFSPPAAAA YRHGGGTGSV AATSTSASTV TTTTSSVSPS  180
SSPSSTTIKF AMTSGGIRTP ILPVPSHHTF TEESTCYRPY LLTTGSDEFQ HQYEQSWTLN  240
TSSLPPTDGR DNACSRMPEL EKISPEKDGP ASPPHGEDRV QGGQDFFDAG NDASDSFLAG  300
ESLSPAVIAA DQLAIAMATA GVSSAAERQR PSCKEEVVQL SRLLGDSPSI LALQRFSSAM  360
DRRVAPSMDA GQDVWVWEVL LPDDHTSSST TCLLDTTNLS DDQETKEPMM ITPPSSDTDV  420
RDEPVDEFKD IGVVLDESTE PSEEAALPEA TDLAAASDGD EGEKPFQSAD TKKPDEVADP  480
SAASDGKEEE KQFQSRDTKE SVDDGEFEGE EDDAIKNKKG NGQERPECAV FSVGKLKVNG  540
IGALCSFGVA AATVCVFLIG GKLHHHHHRH QQQRRQKIQL QFDDKTRVLH SPTPCDLQRI  600
QQVVQQTSKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1342112980Ethylene-responsive transcription factor ERF096
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042733e-57AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02.
GenBankAP0149633e-57AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126153e-57CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-22related to AP2 11