PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00050.1.g02850.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 597aa MW: 64709.4 Da PI: 10.4281

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00050.1.g02850.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.1	8.4e-54	232	359	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yL +k+ + ++ ++i+e+d++k+ePw+Lp+k+k +e+ewyfFs rd+ky+tg r+nrat +g Zjn_sc00050.1.g02850.1.am.mk 232 LPPGFRFHPTDEELVSFYLLRKTLDGSFCG-RAIAEIDLNKCEPWELPEKAKMGEREWYFFSLRDRKYPTGLRTNRATVAG 311 79***********************988.88***********99999************************ PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 yWkatgkd+ev + +g+lvg+kktLvfy+grapkg+kt Wvmheyrle Zjn_sc00050.1.g02850.1.am.mk 312 YWKATGKDREVRAGGGALVGMKKTLVFYRGRAPKGQKTCWVMHEYRLE 359 ********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-59	230	368	IPR003441	NAC domain
PROSITE profile	PS51005	56.416	232	408	IPR003441	NAC domain
Pfam	PF02365	2.9E-27	233	358	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-59	396	408	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0010160	Biological Process	formation of organ boundary
GO:0010223	Biological Process	secondary shoot formation
GO:0048366	Biological Process	leaf development
GO:0048504	Biological Process	regulation of timing of organ formation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MIPGRPADHR SSPPHLDEGR ETPRKDKRNL RSFSRTLSSS LSAADGQLCS LFLFHRMYVT 60 QAYKAPSSPP SLNSSSSHPS HLLQNFDRRS RLGRRRLPCP RRCTSPISSH LAWPPVPETP 120 RHKQSSGHAT HHPSAVPGPS RARRRLPGTD SSNPPFTPPH PPSHLLLCSL PPAPAIKPAT 180 HQEAGSMPKN KLPLSPSPAN EVKILLAGRP AGNRERGAMF GGALGLDVGS DLPPGFRFHP 240 TDEELVSFYL LRKTLDGSFC GRAIAEIDLN KCEPWELPEK AKMGEREWYF FSLRDRKYPT 300 GLRTNRATVA GYWKATGKDR EVRAGGGALV GMKKTLVFYR GRAPKGQKTC WVMHEYRLEG 360 SFAYNHFPGS TRVSAAELWL LQLLRPILAW IWQRSRRDEW VIARVFQKPG EVAPARKSRH 420 HVVGLSSASG GDASCFSDST SASVGGGAAS ASSAPRPLLT VPDASASLFA ANANANAASN 480 DNSCNLVTGR ELVPCFSTSA VPAMDATLGI GQYNYSPAFE PAPSFSNFRS LQDNIQQLPL 540 FLSSSASLLG GGGQHHHWGP GLAGSMEVKL EASMGRPVPP QMAVGPGQLD GAYAWGF

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MIPGRPADHR SSPPHLDEGR ETPRKDKRNL RSFSRTLSSS LSAADGQLCS LFLFHRMYVT  60
QAYKAPSSPP SLNSSSSHPS HLLQNFDRRS RLGRRRLPCP RRCTSPISSH LAWPPVPETP  120
RHKQSSGHAT HHPSAVPGPS RARRRLPGTD SSNPPFTPPH PPSHLLLCSL PPAPAIKPAT  180
HQEAGSMPKN KLPLSPSPAN EVKILLAGRP AGNRERGAMF GGALGLDVGS DLPPGFRFHP  240
TDEELVSFYL LRKTLDGSFC GRAIAEIDLN KCEPWELPEK AKMGEREWYF FSLRDRKYPT  300
GLRTNRATVA GYWKATGKDR EVRAGGGALV GMKKTLVFYR GRAPKGQKTC WVMHEYRLEG  360
SFAYNHFPGS TRVSAAELWL LQLLRPILAW IWQRSRRDEW VIARVFQKPG EVAPARKSRH  420
HVVGLSSASG GDASCFSDST SASVGGGAAS ASSAPRPLLT VPDASASLFA ANANANAASN  480
DNSCNLVTGR ELVPCFSTSA VPAMDATLGI GQYNYSPAFE PAPSFSNFRS LQDNIQQLPL  540
FLSSSASLLG GGGQHHHWGP GLAGSMEVKL EASMGRPVPP QMAVGPGQLD GAYAWGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-46	232	408	20	168	NAC domain-containing protein 19
3swm_B	2e-46	232	408	20	168	NAC domain-containing protein 19
3swm_C	2e-46	232	408	20	168	NAC domain-containing protein 19
3swm_D	2e-46	232	408	20	168	NAC domain-containing protein 19
3swp_A	2e-46	232	408	20	168	NAC domain-containing protein 19
3swp_B	2e-46	232	408	20	168	NAC domain-containing protein 19
3swp_C	2e-46	232	408	20	168	NAC domain-containing protein 19
3swp_D	2e-46	232	408	20	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269\|PubMed:10079219, ECO:0000269\|PubMed:10750709, ECO:0000269\|PubMed:12163400, ECO:0000269\|PubMed:12492830, ECO:0000269\|PubMed:12610213, ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15500463, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16798887, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:17122068, ECO:0000269\|PubMed:17251269, ECO:0000269\|PubMed:17287247, ECO:0000269\|PubMed:9212461}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00562	DAP	Transfer from AT5G53950	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16854978, ECO:0000269\|PubMed:17251269, ECO:0000269\|PubMed:17287247}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU970442	1e-126	EU970442.1 Zea mays clone 345601 CUC2 mRNA, complete cds.
GenBank	KJ727847	1e-126	KJ727847.1 Zea mays clone pUT5891 NAC transcription factor (NAC119) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812735.1	1e-131	protein CUP-SHAPED COTYLEDON 1-like
Swissprot	O04017	2e-86	NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBL	A0A3L6RXJ3	1e-136	A0A3L6RXJ3_PANMI; Protein CUP-SHAPED COTYLEDON 1-like
STRING	Si007886m	1e-128	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9940	35	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	5e-80	NAC family protein

Publications ? help Back to Top
Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Kamiuchi Y,Yamamoto K,Furutani M,Tasaka M,Aida M The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development. Front Plant Sci, 2014. 5: p. 165 [PMID:24817871] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Vialette-Guiraud AC, et al. A Conserved Role for the NAM/miR164 Developmental Module Reveals a Common Mechanism Underlying Carpel Margin Fusion in Monocarpous and Syncarpous Eurosids. Front Plant Sci, 2015. 6: p. 1239 [PMID:26793217] Cui X, et al. REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis. Nat. Genet., 2016. 48(6): p. 694-9 [PMID:27111035] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374] Biot E, et al. Multiscale quantification of morphodynamics: MorphoLeaf software for 2D shape analysis. Development, 2016. 143(18): p. 3417-28 [PMID:27387872] Zheng M, et al. Chloroplast Translation Initiation Factors Regulate Leaf Variegation and Development. Plant Physiol., 2016. 172(2): p. 1117-1130 [PMID:27535792] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] González-Carranza ZH, et al. HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression. PLoS ONE, 2017. 12(9): p. e0185106 [PMID:28934292] Wilson-Sánchez D,Martínez-López S,Navarro-Cartagena S,Jover-Gil S,Micol JL Members of the DEAL subfamily of the DUF1218 gene family are required for bilateral symmetry but not for dorsoventrality in Arabidopsis leaves. New Phytol., 2018. 217(3): p. 1307-1321 [PMID:29139551] Gonçalves B, et al. GDP-L-fucose is required for boundary definition in plants. J. Exp. Bot., 2017. 68(21-22): p. 5801-5811 [PMID:29186469] Sha S, et al. To be serrate or pinnate: diverse leaf forms of yarrows (Achillea) are linked to differential expression patterns of NAM genes. Ann. Bot., 2018. 121(2): p. 255-266 [PMID:29267935] Maugarny-Calès A, et al. Dissecting the pathways coordinating patterning and growth by plant boundary domains. PLoS Genet., 2019. 15(1): p. e1007913 [PMID:30677017]