PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00050.1.g02030.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 443aa    MW: 47765 Da    PI: 11.7863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00050.1.g02030.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-12241287354
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   ++h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  A  +I++L
  Zjn_sc00050.1.g02030.1.am.mk 241 VSHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAASHINEL 287
                                   589************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.919238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9241287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-15241308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-11241289No hitNo description
Gene3DG3DSA:4.10.280.103.5E-15242301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-11244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MERSLGQPPQ NPNFISSHFA SYLHNLDTLV VAATKSSPPM LSASLGRWVG GELLIQAQPV  60
FTTARAAPGM DRRRSSASSL RQARENSTFS DALGFMDAHL KEPLASHGQS PPGKTFPTLH  120
APRRASATSA SELAAWTSRS SRTPSRRLRR RRPSSPSPRP DTRSSSSTRV RSPSNGCLAT  180
SWPRTRDKTS GRRSCGRWGA RFPRRLSYPS SRRSSGTSAA AAPTGKRRGR KPGPRPDGPS  240
VSHVEAERQR RDKLNRRFCD LRAAVPTVSR MDKASLLADA ASHINELRAH VARLEAETKR  300
VSAARWEPVA AASCGGTAGG AGIVDQAVEV RMLGPDAAAV RTTSAAPHAP ARLMGALRAL  360
DLHVPHACVS SVGGVASSSG VRRDSNLVAL WLSSWNEIER IKVEGLHGRG AKMETAGLID  420
VMEDTMPCME LREEEFDIVN MMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-17241301767Transcription factor MYC2
5gnj_B7e-17241301767Transcription factor MYC2
5gnj_E7e-17241301767Transcription factor MYC2
5gnj_F7e-17241301767Transcription factor MYC2
5gnj_G7e-17241301767Transcription factor MYC2
5gnj_I7e-17241301767Transcription factor MYC2
5gnj_M7e-17241301767Transcription factor MYC2
5gnj_N7e-17241301767Transcription factor MYC2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065253e-59AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072543e-59AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149653e-59AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-59CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-23bHLH family protein