PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 26908.9 Da PI: 5.7841

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00050.1.g01390.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.6e-20	32	86	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +ft+eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Zjn_sc00050.1.g01390.1.am.mkhc 32 RNKKRFTEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 86 67789*************************************************9 PP
2	HD-ZIP_I/II	122	2.9e-39	33	124	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 +k+r+++eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L Zjn_sc00050.1.g01390.1.am.mkhc 33 NKKRFTEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESL 111 79*************************************************************************** PP HD-ZIP_I/II 81 ekeveeLreelke 93 +ke+++L ++l++ Zjn_sc00050.1.g01390.1.am.mkhc 112 KKEKHALLKQLEK 124 ******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-20	16	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-19	21	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	28	88	IPR001356	Homeobox domain
SMART	SM00389	1.2E-16	31	92	IPR001356	Homeobox domain
CDD	cd00086	1.06E-16	32	89	No hit	No description
Pfam	PF00046	2.7E-17	32	86	IPR001356	Homeobox domain
PRINTS	PR00031	7.9E-6	59	68	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	63	86	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.9E-6	68	84	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.5E-13	88	130	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEGDEDVPEW MMDPGGAGGG KGGKGGGGAV DRNKKRFTEE QIKSLESMFA TQTKLEPRQK 60 LQLARELGLQ PRQVAIWFQN KRARWKSKQL EREYSALRDD YDALLCSYES LKKEKHALLK 120 QLEKLAEMLQ EPAPKYSNNA DAGPRDDSRK GVTTGMKEEF SDVRPAPYAS SLKEGGGKLA 180 QHFADDDAGT FFRAPSPQPS AGFTASGPPE HQPFQFHSSC WPSSAEQSCG SSQWWEFESL 240 SE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	27	GGKGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001183573.1	1e-121	uncharacterized protein LOC100502166
Swissprot	Q651Z5	1e-88	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	1e-88	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A0A9CR23	1e-124	A0A0A9CR23_ARUDO; Uncharacterized protein
STRING	GRMZM2G041462_P01	1e-120	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	4e-43	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]