PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00049.1.g04220.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 725aa MW: 80547.9 Da PI: 8.6208

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00049.1.g04220.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.1	7e-11	355	381	24	50
HHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 24 AeELSvLCdaevaviifsstgklyeys 50 A+ELSvLCd+++a+i+fs+++kl +s Zjn_sc00049.1.g04220.1.am.mk 355 AYELSVLCDIDIALIMFSPSQKLSHFS 381 9**********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0071	296	383	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.568	355	384	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.7E-8	355	380	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-8	355	384	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MASSTPLGVR GTSTQPVKRD DCMPDAQTNH ALRLPEQQLP ARTKRTLPIL FGNGSWRPGL 60 QLLGETKPEA RRRDLERRGS RGSPGATTKP RTEPGGRQDN KRPTLFSILA GPVIPSLSRV 120 LAQGKRLCHV GWWRRRQLAS RRQRGIHFQM EGPSLSKQTI SSKRTIAICA IRSCKYVNGN 180 IDRLTDTPPP PPPNITYRWN PPAGQTRASR SSSVDQNSGA EHRECRHHQL PQLPSCQLGH 240 CSKDIRLVQA CSQPATCCCS YSLARSPCQD RRQSLPFIGQ APQRQLDDGS SRQPATRRRR 300 TTTKSAREAG PLGRWALQLA GSRLFFVPAF RRPQGTHRNH QFALYVTAAT TSDTAYELSV 360 LCDIDIALIM FSPSQKLSHF SGRTRSVVVV LRPPLLTFGW FSSLFTDRPR EDPSACMIES 420 GAWFRVQDRG RDHQCSRIDA DLTKITCLDK HAVPDEDADA AQVRGRHRRA THHHQVRRLL 480 ASPSLPPSVV LFAPANPNTE ELQQDIRRIQ QQVQLTEERL RLFEPDAAAL ASADEIDACE 540 KFLIDTLASV QDRKQYLLRN HVDPFDPSAS DMQHVFLTPP QHEQQQQQQG DDMAAVNAFG 600 DDVVSWFADG MPSIFGGPDP VLSFRDQAMY DPMRRDPVVD PGMPMCYVDQ QGPSDDWQQA 660 YTSAEFLSSL IPSTPFPLDD QDVMAPVLTS PMAPPPHVLE PVETAGSSSH VPAPEDGLAG 720 AVNIG

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MASSTPLGVR GTSTQPVKRD DCMPDAQTNH ALRLPEQQLP ARTKRTLPIL FGNGSWRPGL  60
QLLGETKPEA RRRDLERRGS RGSPGATTKP RTEPGGRQDN KRPTLFSILA GPVIPSLSRV  120
LAQGKRLCHV GWWRRRQLAS RRQRGIHFQM EGPSLSKQTI SSKRTIAICA IRSCKYVNGN  180
IDRLTDTPPP PPPNITYRWN PPAGQTRASR SSSVDQNSGA EHRECRHHQL PQLPSCQLGH  240
CSKDIRLVQA CSQPATCCCS YSLARSPCQD RRQSLPFIGQ APQRQLDDGS SRQPATRRRR  300
TTTKSAREAG PLGRWALQLA GSRLFFVPAF RRPQGTHRNH QFALYVTAAT TSDTAYELSV  360
LCDIDIALIM FSPSQKLSHF SGRTRSVVVV LRPPLLTFGW FSSLFTDRPR EDPSACMIES  420
GAWFRVQDRG RDHQCSRIDA DLTKITCLDK HAVPDEDADA AQVRGRHRRA THHHQVRRLL  480
ASPSLPPSVV LFAPANPNTE ELQQDIRRIQ QQVQLTEERL RLFEPDAAAL ASADEIDACE  540
KFLIDTLASV QDRKQYLLRN HVDPFDPSAS DMQHVFLTPP QHEQQQQQQG DDMAAVNAFG  600
DDVVSWFADG MPSIFGGPDP VLSFRDQAMY DPMRRDPVVD PGMPMCYVDQ QGPSDDWQQA  660
YTSAEFLSSL IPSTPFPLDD QDVMAPVLTS PMAPPPHVLE PVETAGSSSH VPAPEDGLAG  720
AVNIG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021305679.1	1e-99	agamous-like MADS-box protein AGL66 isoform X5
TrEMBL	A0A194YI31	3e-98	A0A194YI31_SORBI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4953	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	4e-14	AGAMOUS-like 104