PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00049.1.g02790.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 244aa    MW: 26515.1 Da    PI: 7.2039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00049.1.g02790.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-091191591055
                                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     + RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  Zjn_sc00049.1.g02790.1.sm.mkhc 119 QLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 159
                                     67******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575131No hitNo description
PROSITE profilePS5088812.538109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-12119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6120159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-10121163No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13122163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRHHEAFVVV VVPSGQTVTL HGHPNLGITG CYYEVHQQPN ASSLHHTSPQ SPPPSLLLPC  60
SRVTTPLVSR SFSNLPSPSR CSVLVTTLDS KEFFRGRLPS FATIQETNLP GGGFKTQKQL  120
RREKISDRMK NLQDLVPNSN KADKASMLDE IIDYVKFLQL QVKGCCDQPL SAPTAAHGLS  180
DAQDSEDSED TLAFEQEVVK LMETSVTSAM QYLQNKGLCL MPVALASSIS NEKGTAGAAV  240
PAQR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4686543e-39DQ468654.1 Zea mays bHLH transcription factor PTF1 mRNA, complete cds.
GenBankEU9578573e-39EU957857.1 Zea mays clone 1627284 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812392.11e-59transcription factor bHLH110-like
TrEMBLA0A2S3HL112e-58A0A2S3HL11_9POAL; Uncharacterized protein
STRINGPavir.Db01966.1.p4e-57(Panicum virgatum)
STRINGPavir.J15280.1.p7e-59(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.16e-36LJRHL1-like 1