 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00049.1.g02790.1.sm.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
bHLH |
| Protein Properties |
Length: 244aa MW: 26515.1 Da PI: 7.2039 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00049.1.g02790.1.sm.mkhc | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 28.7 | 2.4e-09 | 119 | 159 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq
Zjn_sc00049.1.g02790.1.sm.mkhc 119 QLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 159
67******************7.....5******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MRHHEAFVVV VVPSGQTVTL HGHPNLGITG CYYEVHQQPN ASSLHHTSPQ SPPPSLLLPC 60
SRVTTPLVSR SFSNLPSPSR CSVLVTTLDS KEFFRGRLPS FATIQETNLP GGGFKTQKQL 120
RREKISDRMK NLQDLVPNSN KADKASMLDE IIDYVKFLQL QVKGCCDQPL SAPTAAHGLS 180
DAQDSEDSED TLAFEQEVVK LMETSVTSAM QYLQNKGLCL MPVALASSIS NEKGTAGAAV 240
PAQR
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ468654 | 3e-39 | DQ468654.1 Zea mays bHLH transcription factor PTF1 mRNA, complete cds. |
| GenBank | EU957857 | 3e-39 | EU957857.1 Zea mays clone 1627284 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
