PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00047.1.g01940.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 490aa MW: 53600.2 Da PI: 7.0938

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00047.1.g01940.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.7e-31	100	153	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL++ hvkSHLQ+YR+ Zjn_sc00047.1.g01940.1.sm.mk 100 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIGHVKSHLQMYRS 153 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-28	96	154	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.255	96	156	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-13	99	154	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-22	100	155	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	101	152	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MDHKQVLQVL DDDEEIRSMG NNALDLNVDV VSEEGEVGDD DDEDDGDGGS TTDAAGSRSS 60 SNNSSTNKDS ESKKGCGGEV EGSGEKRVPS VRPYNRSKLP RLRWTPDLHM AFVHAVERLG 120 GQERATPKLV LQMMNVRGLS IGHVKSHLQM YRSKKLDQDG RPRGAVSSVH SPMDFHFMRG 180 ERGFHGLSFL QRAAALSSSG PEHGGFFASR NGGRTNFSRI YGLLQHHRQP QMQSFDFRSS 240 SFRRHERALN QREEVITRKE VFKQPSTSRP QPHHPLAPSP ASISSERRWW PFADAGAAVA 300 GEHTRVDTGQ GANFESSFGS NSRPLSWVVS GDLHLPFRWR PGSGGSHVSN NTAMIRKPSD 360 PVVIDEAPDD AQQLERQEYV EPIRGACRKR PLSEAQDSTA PDLQLSLSHS PTAAVDDAKK 420 RKTAAAAGEQ EVIHSSELSI SLSLWPPAAA SMQLQHPPRE KTRGSSGSGS GEAVLGQSTL 480 DLTMSIRALE

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MDHKQVLQVL DDDEEIRSMG NNALDLNVDV VSEEGEVGDD DDEDDGDGGS TTDAAGSRSS  60
SNNSSTNKDS ESKKGCGGEV EGSGEKRVPS VRPYNRSKLP RLRWTPDLHM AFVHAVERLG  120
GQERATPKLV LQMMNVRGLS IGHVKSHLQM YRSKKLDQDG RPRGAVSSVH SPMDFHFMRG  180
ERGFHGLSFL QRAAALSSSG PEHGGFFASR NGGRTNFSRI YGLLQHHRQP QMQSFDFRSS  240
SFRRHERALN QREEVITRKE VFKQPSTSRP QPHHPLAPSP ASISSERRWW PFADAGAAVA  300
GEHTRVDTGQ GANFESSFGS NSRPLSWVVS GDLHLPFRWR PGSGGSHVSN NTAMIRKPSD  360
PVVIDEAPDD AQQLERQEYV EPIRGACRKR PLSEAQDSTA PDLQLSLSHS PTAAVDDAKK  420
RKTAAAAGEQ EVIHSSELSI SLSLWPPAAA SMQLQHPPRE KTRGSSGSGS GEAVLGQSTL  480
DLTMSIRALE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	101	155	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	101	155	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	101	155	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	101	155	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824409.1	1e-173	uncharacterized protein LOC112899951 isoform X1
TrEMBL	A0A2S3GN02	1e-172	A0A2S3GN02_9POAL; Uncharacterized protein
STRING	Si016955m	1e-165	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2754	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-34	G2-like family protein