PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00047.1.g01530.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 590aa    MW: 62852.6 Da    PI: 8.8558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00047.1.g01530.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13191241255
                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++ h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zjn_sc00047.1.g01530.1.am.mk 191 KMLHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 241
                                   57799***********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.77E-13187245No hitNo description
PROSITE profilePS5088815.046189240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-16191262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-12191253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MSPGWQFIEC PLPCCIGAVT LLRPAAALAP PAAFIILPGQ ARAGCAHNQY TGTTHTRRSR  60
SSRQAYVLLR RAPHFRPMGD GPCELLVDGR CDRLRHVSDA EDLFSILRTW EECTNGVPGG  120
ASAAESASAF RQTCTGGPVA AVGRPSTTGS SRRRSSVADE DKVGGAPMQK KQKGAAPPAL  180
QALDDDDGVA KMLHIAVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL  240
QQVLRLLEAK KDRKAYADQV LSPRPGAGAS PRPLVKSTPP ISPRLAVPIS PRTPSRPGSP  300
YNLPSCGAGG RLPHPAAAAY MIATSPAVTP TPTSSSWCSS CNHSWHDYRQ QNYPPQPQYL  360
PTLDSIVTEL VAHASASRPA LVPDVKVEFA GPNLVLKTVS HRAPGQALKI IAALESLSLE  420
ILHVSVSTVD ETMVHSFTIK IGIECELSAQ ELVQEIQRTF SFYPRHPSPL AARKASSSQP  480
SQPPSLSLPA SGLPHPNPSY KPGIQRSEDG GLRSGYCTLM KNNENGLVLQ VQKAVEGLEL  540
RGGESVLASA AGAEFTLLSA FASTSDSADG AEGGEGGLRS EYCKILSVAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151172RRRSSVADEDKVGGAPMQKKQK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615855e-74BT061585.1 Zea mays full-length cDNA clone ZM_BFb0161H07 mRNA, complete cds.
GenBankKJ7268675e-74KJ726867.1 Zea mays clone pUT3408 bHLH transcription factor (bHLH139) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.11e-153transcription factor SPEECHLESS-like
TrEMBLA0A3L6QHE71e-153A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Ab01030.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-37bHLH family protein