 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00046.1.g00190.1.sm.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
LBD |
| Protein Properties |
Length: 222aa MW: 23097.2 Da PI: 6.2327 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00046.1.g00190.1.sm.mkhc | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 94.4 | 1.3e-29 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74
+C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l a+p ++r+++++sl+yeA+ r+ +Pv+
Zjn_sc00046.1.g00190.1.sm.mkhc 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLGAVPLQHRPALFRSLLYEACGRTINPVS 80
6*********************9999888899*********************************************** PP
DUF260 75 Gavgvilklqqqleqlkaelallke 99
Ga+g++++++++l+q++ae++l++e
Zjn_sc00046.1.g00190.1.sm.mkhc 81 GAIGLMWTGNWDLCQAAAEAVLRGE 105
*******************998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLGAVPLQHR 60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAAEA VLRGESLRAL SAIPAAFTDR 120
DMAGLYGNVD VAASSSPEHS SSTPSRKRKN CGRFLAGTDD CQPPAGLLLQ PCELHLCLTP 180
ASLPAGGRPG CGTSNEDSGT TTCEEASGDV EAGVPTLLNL FS
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK288002 | 1e-124 | AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence. |
