 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00045.1.g04260.1.am.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
SBP |
| Protein Properties |
Length: 382aa MW: 41287 Da PI: 8.1198 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00045.1.g04260.1.am.mkhc | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 131.9 | 2.2e-41 | 181 | 257 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
CqvegC+ dls+ak+yhr+h+vCe+hskap+v+v+gle+rfCqqCsrfh+lsefD+ krsCrrrL++hn+rrrk+q+
Zjn_sc00045.1.g04260.1.am.mkhc 181 CQVEGCKFDLSSAKDYHRKHRVCEAHSKAPKVIVNGLERRFCQQCSRFHALSEFDQIKRSCRRRLNDHNARRRKQQP 257
**************************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048653 | Biological Process | anther development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MGSFGMDWSQ RGSMLWDWEN LSPIGANSND NPTISLQAEP KFACFEATGH ESVHSSCGTF 60
SSNSEMGYCS SKSSIASIDS SPKPGDTVEL NFALVKVLGK GTDHKTALGK VDDARSSPSS 120
VIAVSSGEPV IGLKLGKRTY FEDACGEQSA KNSPLGTSAV TPTTTSTKKA KVAQTAQNMY 180
CQVEGCKFDL SSAKDYHRKH RVCEAHSKAP KVIVNGLERR FCQQCSRFHA LSEFDQIKRS 240
CRRRLNDHNA RRRKQQPDAI SFGASRLSTM FYGIEASVAA NLNGAPDLQR ALSLLSNNSA 300
DASSDQPISQ LHPALVTIAS SSNPVVQGSS GLWQDGTALD HEARFQAFDP VSNRSPIAAP 360
HQLHLLKLPA YDSSPSHYDQ MN
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT039521 | 5e-76 | BT039521.1 Zea mays full-length cDNA clone ZM_BFc0017D10 mRNA, complete cds. |
| GenBank | BT039945 | 5e-76 | BT039945.1 Zea mays full-length cDNA clone ZM_BFc0054D09 mRNA, complete cds. |
| GenBank | BT053864 | 5e-76 | BT053864.1 Zea mays full-length cDNA clone ZM_BFb0339F10 mRNA, complete cds. |
