PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g03640.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 477aa    MW: 54215.7 Da    PI: 9.3582
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g03640.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-071135127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                    ykt+lC  ++r G C+  d+C+FaHg+
  Zjn_sc00045.1.g03640.1.sm.mkhc 11 YKTKLCAVWQR-GGCSN-DTCSFAHGK 35
                                    9**********.*****.*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-12541IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.69E-5939IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9721036IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-41135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MRGPPRRGPA YKTKLCAVWQ RGGCSNDTCS FAHGKAELRQ YPGSRTSFPP RRDLAVAWLC  60
FEIPTEVKRL LPELLKTENN SNKCKLVAEL GGIPTGRRDY RGEVFRNRFD RRRSPHRRYS  120
PESDSRCHRS LHNRRPTSQE RESSYSRSPS RKSSLSERRH EKKPDDGETN SSRSMSVSDN  180
NDDRSKDKFS SGNDKEDHEK QLKLIRDNTA LLRDDKSHLE IILEEKNAEV RKVLSRINDL  240
DLQLKKEKEE CHRMTSKVKK FIKAHGRFLK AQEELKRSQA RFERLGDLLA SDILKRGANE  300
EGSSIDVDED PSGYERNPNS AAPKKKSILY STSEEAKAVK KRRERDSDTV LETEKYKSEG  360
TVVELDKQNK GSETTKSLYL KKRLWADKLG NVASLASADK VRDSPVKHVL PSTGMAAHSM  420
DDPIEAVELE GRHEPMDAAL ENDADEETRL PAMPPCSPPM VNAYKQSEGG DLEVDVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323342KKKSILYSTSEEAKAVKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815366.10.0zinc finger CCCH domain-containing protein 13-like isoform X1
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A2T8KU070.0A0A2T8KU07_9POAL; Uncharacterized protein
STRINGSi017193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-21C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]