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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00045.1.g03570.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 245aa MW: 26495.4 Da PI: 6.3122 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.3 | 2.1e-18 | 19 | 61 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 kri ++ +rqv fskR+ g++KKA+ LS LC+a vav+ fs+ Zjn_sc00045.1.g03570.1.sm.mk 19 KRIASEEKRQVCFSKRKDGLFKKASDLSALCGAHVAVVAFSPG 61 79***************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.3E-28 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.507 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-25 | 11 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.38E-32 | 12 | 87 | No hit | No description |
PRINTS | PR00404 | 9.1E-17 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-23 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-17 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-17 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MTIERKRKKT MGRQKIEIKR IASEEKRQVC FSKRKDGLFK KASDLSALCG AHVAVVAFSP 60 GAKPFSFGHP SVDALVGRFT DPAAPGAMGP APVHSALLEE FSREEEFLAK ALAAEASRKK 120 ALEAAICQAG VWTGDADVKS ASPNDVLAMR SALERVQAEV AERLQEFMAE EAMMQLTASA 180 GLFVADGGVS SHHRDQVVMD EQKMVAMGGN VDHALPFAAM MLPLPPYDHC FDLNHGPVFE 240 VEGQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 5e-18 | 11 | 105 | 1 | 92 | MEF2 CHIMERA |
6bz1_B | 5e-18 | 11 | 105 | 1 | 92 | MEF2 CHIMERA |
6bz1_C | 5e-18 | 11 | 105 | 1 | 92 | MEF2 CHIMERA |
6bz1_D | 5e-18 | 11 | 105 | 1 | 92 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 8 | RKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813008.1 | 2e-54 | MADS-box protein AGL71-like | ||||
TrEMBL | A0A1E5W085 | 3e-58 | A0A1E5W085_9POAL; Uncharacterized protein | ||||
STRING | Sb04g004410.1 | 2e-51 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13309 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-26 | AGAMOUS-like 62 |