PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00044.1.g05020.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 335aa MW: 36854.8 Da PI: 6.5787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00044.1.g05020.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.8	2.5e-54	17	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdee+v++yL +k+ + +++ vi++vd++k+ePw+Lp k+k +ekewyfF+++d+ky+tg+r+nrat+ Zjn_sc00044.1.g05020.1.sm.mkhc 17 LPPGFRFHPTDEEVVSHYLIPKALSCLFTC-LVIADVDLNKCEPWELPGKAKMGEKEWYFFCHKDRKYPTGTRTNRATA 94 79**********************9999.78***********99999********************** PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatgkdke+++ +g lvg+kktLvfy grap+g+kt Wvmheyr+ Zjn_sc00044.1.g05020.1.sm.mkhc 95 SGYWKATGKDKEIFRGRGVLVGMKKTLVFYLGRAPHGKKTPWVMHEYRI 143 *********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-64	6	167	IPR003441	NAC domain
PROSITE profile	PS51005	57.514	17	167	IPR003441	NAC domain
Pfam	PF02365	4.1E-28	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MSEVSEMHNQ GEEQLELPPG FRFHPTDEEV VSHYLIPKAL SCLFTCLVIA DVDLNKCEPW 60 ELPGKAKMGE KEWYFFCHKD RKYPTGTRTN RATASGYWKA TGKDKEIFRG RGVLVGMKKT 120 LVFYLGRAPH GKKTPWVMHE YRIEGGLPPN LPRAAKDEWA VCRVFNKEHL AAKPGLQQTA 180 STSSPAAAGT MQRSDSLAFL DDLLDPADLP PLTDSPFADD FKGAAVPGSM SNMISGCQQV 240 KTEQPAPAQN PPPPALMQDT AYSYFSLPAT NNNTGGYSHH PQAAGADHLS AIRRHCTATA 300 PAPASPDIAR TPLYPELESL DDLGGFMDYS NMWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-55	14	173	17	174	NAC domain-containing protein 19
3swm_B	7e-55	14	173	17	174	NAC domain-containing protein 19
3swm_C	7e-55	14	173	17	174	NAC domain-containing protein 19
3swm_D	7e-55	14	173	17	174	NAC domain-containing protein 19
3swp_A	7e-55	14	173	17	174	NAC domain-containing protein 19
3swp_B	7e-55	14	173	17	174	NAC domain-containing protein 19
3swp_C	7e-55	14	173	17	174	NAC domain-containing protein 19
3swp_D	7e-55	14	173	17	174	NAC domain-containing protein 19
4dul_A	5e-55	14	173	14	171	NAC domain-containing protein 19
4dul_B	5e-55	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096183	1e-155	FP096183.1 Phyllostachys edulis cDNA clone: bphyem213g04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461233.1	1e-123	NAC domain-containing protein 79
Swissprot	Q9FK44	7e-88	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0A9IAM4	1e-133	A0A0A9IAM4_ARUDO; Uncharacterized protein
STRING	Sb02g043270.1	1e-123	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	5e-83	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]