![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00044.1.g02180.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 1207aa MW: 134338 Da PI: 5.9408 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.6 | 1.8e-56 | 21 | 137 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvev 80 ++ ++rwl++ ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+v Zjn_sc00044.1.g02180.1.sm.mkhc 21 VEAQNRWLRPAEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDV 99 6679*************************************************************************** PP CG-1 81 lycyYahseenptfqrrcywlLeeelekivlvhylevk 118 l+cyYah+e+n++fqrr+ywlLee + +ivlvhylevk Zjn_sc00044.1.g02180.1.sm.mkhc 100 LHCYYAHGEDNANFQRRTYWLLEEGFMNIVLVHYLEVK 137 ***********************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.103 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.8E-78 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.3E-50 | 22 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 4.8E-5 | 444 | 531 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 7.5E-5 | 445 | 518 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 9.8E-16 | 445 | 531 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 9.33E-17 | 621 | 736 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.04E-13 | 622 | 734 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.8E-17 | 628 | 737 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.918 | 642 | 736 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.9E-7 | 648 | 737 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.19 | 675 | 707 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.14 | 675 | 707 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 460 | 714 | 743 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 0.094 | 849 | 871 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 9.56E-8 | 850 | 900 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 8.846 | 850 | 879 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0066 | 851 | 870 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0063 | 872 | 894 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.359 | 873 | 897 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.1E-4 | 875 | 894 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF03966 | 3.2E-14 | 1079 | 1196 | IPR005651 | Uncharacterised protein family UPF0434/Trm112 |
Gene3D | G3DSA:2.20.25.10 | 2.6E-7 | 1172 | 1204 | No hit | No description |
SuperFamily | SSF158997 | 4.05E-6 | 1173 | 1206 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071275 | Biological Process | cellular response to aluminum ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1207 aa Download sequence Send to blast |
MAEMRNYSVS NQPPDIPQIL VEAQNRWLRP AEICQILSNY KKFSIAPEPP NRPPSGSLFL 60 FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEDN ANFQRRTYWL 120 LEEGFMNIVL VHYLEVKGGK ESFSCTKEAE EIAGLSSADS PACSNSFASQ SQVASQTMDA 180 ESPISGQILE YEDAETDNCR ASSRYNPFTE MQQPLDANVM DPFLGASVPN TSPNNLGYFG 240 QMQPTTANLN NHFVTHDAMS SMFNESGSGL RNDPKTPLDS VRFGETFPEY ASGFTEPRIY 300 SSVATTESNN LDDNSYLQTY VSEALYTNNL TKKEADALSA AGITPSQAEN DSYTDRSIRY 360 PLLKQSSLDL FNMEPDGLKK FDSFSRWMSS ELAEVVDLSV KSSSDAFWST TETENVADGN 420 NIPINEQLDA FVVSPSLSQD QLFSIIDVSP SWAYTGSKTK VLITGTFLAN KEDVEQCRWS 480 CMFGDVEVPA EVLVDGSLRS YTPVHHSGRV PFYVTCSNRV ACSEVREFEF RDSEARYMET 540 SDPQTTGVNE MHLHIRLEKL LSLGPDDYEK YVLSSGNKSE LIDTINALML DDKFSNMALP 600 SDEKISTVRD QNFEKLMKEK LYYWLIHKIH DDGKGPNVLG KEGQGVIHLV AALGYDWAIR 660 PIVAAGVNVN FRDIRGWTAL HWAASCGRER TVGALIANGA ASGALTDPTP QFPSGRTAAD 720 LASENGHKGI AGFLAESALT SHLSALTLKE SQVDNVEEIC GSAASDDFME SSSAQLACAD 780 SQAESLKDSL TAVRKSTQAA ARIFQAFRVE SFHRKKVIEY GDDDCGLSDE RTLSLVSLKH 840 AKPGQGDVPL HSAAVRIQNK FRGWKGRKEF MLIRQKIVKI QAHVRGHQVR KSFRKIVWSV 900 GIVEKVILRW RRKRRGLRGF QAEKQLEGPS QSQIQPAGVE DEYDFLKDGR KQAEGRLQRA 960 LARVHSMTQY PEARDQYRRL QTCVTKLQES KEMEDRMLSG SAGADGASAH VTFAASGREH 1020 EEAQNAGTTH LSGSPKPSPS SARVFLRSRS TPPEQRGHPL TPTREEQPQL EIGKVEMRLL 1080 THNMLASNVR GVTTGYPLKL EATNWCTKEV ELNADFIKGL LPKIDWRALV AATRALDLPE 1140 LLPEEQPPVE EIFAEGAADV EGSAIRRIHH ALLEIHVQQG ALVCPESGRT FPIEKGIPNM 1200 MLHEDEI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ped_B | 3e-27 | 1077 | 1206 | 19 | 140 | Multifunctional methyltransferase subunit TRM112-like protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00043 | PBM | Transfer from AT5G64220 | Download |
![]() |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU973501 | 1e-128 | EU973501.1 Zea mays clone 399786 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800735.1 | 0.0 | calmodulin-binding transcription activator 3-like | ||||
TrEMBL | A0A2T7EYS2 | 0.0 | A0A2T7EYS2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00386.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |