PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00044.1.g00550.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 282aa MW: 31091.4 Da PI: 4.9192 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.5e-10 | 211 | 251 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+A +Y+k Lq Zjn_sc00044.1.g00550.1.sm.mk 211 RKRRERINERLRILQTLVPNG-----TKVDISTMLEEAAHYVKFLQ 251 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.519 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 202 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-11 | 206 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 207 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.01E-12 | 210 | 255 | No hit | No description |
Pfam | PF00010 | 2.6E-7 | 211 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MESPYISSTL SMEIDVMEQF LGAHDHYFAY EHVDESIEAM AALFLPSLDT DSNSSSSCLN 60 HDVPPQCWPQ PDHSSSVTFL DPAQSFEFPV MEPFPSADFD SHSGIPYFSE DCSLRGNHFS 120 VSEEEAAKDA PASKKRKSSA VTKASKKIKK VGKKNYVGND NGGNSYAETQ SSSSCTSENG 180 NLEGNANSSS TKTCTRASRG AATDPQSLYA RKRRERINER LRILQTLVPN GTKVDISTML 240 EEAAHYVKFL QLQIKLLSSD DMWMYAPIAY NGVNISDVDL NI |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959802.2 | 1e-145 | transcription factor bHLH54 | ||||
Swissprot | Q84WK0 | 2e-48 | BH085_ARATH; Transcription factor bHLH85 | ||||
TrEMBL | A0A1E5UZQ7 | 1e-151 | A0A1E5UZQ7_9POAL; Transcription factor bHLH84 | ||||
STRING | Si032445m | 1e-144 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12496 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 4e-37 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Publications ? help Back to Top | |||
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