PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g00400.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 586aa    MW: 63314.8 Da    PI: 5.7358
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g00400.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.41.6e-971825853374
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   +lLlecA+av+++d ++aq+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l
  Zjn_sc00044.1.g00400.1.sm.mk 182 QLLLECARAVAARDSHRAQQLMWMLNELASPYGDLEQKLASYFLQGLFARLTTSGPRTLRTLAAASDRNT-SFDSTRRTAL 261
                                   79************************************************************99888744.4444444444 PP

                          GRAS  84 .fsevsPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.. 153
                                    f+e+sP+  f+h++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++  
  Zjn_sc00044.1.g00400.1.sm.mk 262 rFQELSPWSSFGHVAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSap 342
                                   6*********************987766667778999************************889***********988889 PP

                          GRAS 154 ...skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdev 227
                                       ++ ++e+g+r++kfA+ +gvpf+f++++++ +l++l+l++L+++      alaVn++ ++  ++  ++  +  rd++
  Zjn_sc00044.1.g00400.1.sm.mk 343 taaVQRVMREIGQRMEKFARLMGVPFSFKAVHHSgDLAELDLDALDLRDggaTTALAVNCINSMRGVV--PGGARR-RDAF 420
                                   999999*************************8888**************888889************9..555555.99** PP

                          GRAS 228 LklvkslsPkvvvvveqeadh.nse.............sFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                      +++l P+vv+vve+ead    +              Fl+ f+e l+++sa +dsle+++p++s+er  +Er   gr+i
  Zjn_sc00044.1.g00400.1.sm.mk 421 AASLRRLDPRVVTVVEEEADFvA-SdgassdeggdseaAFLKVFSEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAI 499
                                   ******************99953.447899999***99*************************************.***** PP

                          GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLv 368
                                   v++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++llr++  +g+++ e         + ++l Wk++pLv
  Zjn_sc00044.1.g00400.1.sm.mk 500 VDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYR-EGWSMREAslddsaaGAGVFLAWKEQPLV 579
                                   **************************************************9.88888865566666455566********* PP

                          GRAS 369 svSaWr 374
                                   ++SaWr
  Zjn_sc00044.1.g00400.1.sm.mk 580 WASAWR 585
                                   *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.167154559IPR005202Transcription factor GRAS
PfamPF035145.4E-95182585IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MDTLFRLVSL QASEPQQQQQ SPSYNSRSTT SSGSRSSSHQ TNASYNYYYH STSSGGGGQY  60
YYGQHHQQQY YLDPYQEECG NTHHLYMDED FSSSSSSRQQ FHSHGATVQP PTSSTATPTA  120
PTPPLSTSST AAGAAHALFE GADLSYPPDL NLDFSSPASS SGGGGASSAA AGGGGRGRWG  180
SQLLLECARA VAARDSHRAQ QLMWMLNELA SPYGDLEQKL ASYFLQGLFA RLTTSGPRTL  240
RTLAAASDRN TSFDSTRRTA LRFQELSPWS SFGHVAANGA ILESFLEAAA ASSEPQRFHI  300
LDLSNTFCTQ WPTLLEALAT RSADDTPHLS ITTVVSAAPS APTAAVQRVM REIGQRMEKF  360
ARLMGVPFSF KAVHHSGDLA ELDLDALDLR DGGATTALAV NCINSMRGVV PGGARRRDAF  420
AASLRRLDPR VVTVVEEEAD FVASDGASSD EGGDSEAAFL KVFSEGLRFF SAYMDSLEES  480
FPKTSNERLA LERGAGRAIV DLVSCPASES MERRETAASW ARRMRSAGFS PVAFSEDVAD  540
DVRSLLRRYR EGWSMREASL DDSAAGAGVF LAWKEQPLVW ASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-16017858631420Protein SHORT-ROOT
5b3h_E1e-16017858631420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673280.0BT067328.1 Zea mays full-length cDNA clone ZM_BFc0012E13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670524.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A3L6DWN30.0A0A3L6DWN3_MAIZE; Protein SHORT-ROOT 1
TrEMBLF2E4A50.0F2E4A5_HORVV; Predicted protein
STRINGMLOC_62665.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-138GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]