PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g00060.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 660aa    MW: 72704.1 Da    PI: 6.9624
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g00060.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.78.5e-1342906591373
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                     l++lL++cA+av++++  +++ l+ +l++++s +g+p++Rl ay++e+L arla s++++ykal+++e +    se l+
  Zjn_sc00044.1.g00060.1.sm.mkhc 290 LKDLLITCARAVEENNSFAINLLIPELRKMVSVSGEPLERLGAYMVEGLVARLAASGNSIYKALKCKEPK---GSELLS 365
                                     5789*****************************************************************9...9***** PP

                            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156
                                     ++++++e++P++kf+++ aN aI eav+ge+r+HiiDf isqG+QW++LlqaLa+Rp+gpp +RiTg++++ s   +  
  Zjn_sc00044.1.g00060.1.sm.mkhc 366 YMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPFVRITGIDDSFSAfaRGG 444
                                     **********************************************************************77769999* PP

                            GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                      le +g+rL+++A  ++vpfef+  v  + +d+e+e+L + pgEa++Vn+ l+lh+++de vs++++rd++L+l+ksls
  Zjn_sc00044.1.g00060.1.sm.mkhc 445 GLELVGKRLSHVAGLCKVPFEFHG-VGVSGHDIEVEHLGIVPGEAIVVNFTLELHHIPDEAVSTANHRDRILRLIKSLS 522
                                     ************************.7999************************************************** PP

                            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                     Pkv+++veqe+++n+++F++rf+e+l+yy+a+f+s++  lpr+++eri++E+++l+reivn+vaceg+er+erhe ++k
  Zjn_sc00044.1.g00060.1.sm.mkhc 523 PKVLTLVEQESNTNTAPFVQRFAETLDYYTAIFESIDLALPRDDKERINMEQHCLAREIVNLVACEGEERVERHEVFGK 601
                                     ******************************************************************************* PP

                            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                     W++rl++aGF+p pls  +++++k+ll++++ + y++ e++g l+lgWk+rpLv+ SaW
  Zjn_sc00044.1.g00060.1.sm.mkhc 602 WKSRLMMAGFRPSPLSALVNATIKTLLQTYSPN-YKLLEREGVLYLGWKNRPLVVSSAW 659
                                     *******************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.494264641IPR005202Transcription factor GRAS
PfamPF035142.9E-131290659IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MREDRGPRAT RTPRAGEAPR SGAARVEIAA PPGIIPHFPH FLRGNIPPLS PGPQHHHHPP  60
AWCLHPPATA HGAHFCHHDF ASPRNRAVSF TELRRAEDPS WAARRRSVGA RERMADTPTS  120
GMVHPFGNVP RQTAKQFLYP SNSQHLCHPY QTASDTHVVP QHHYNMKSHS LDADSESQES  180
HQQYTLDSSA GSGGTRHDSP SSQSHPTGSG SSVSQEDSHS GSTNGNGSPV STSCVTEDPD  240
DLKQKLKDLE AAMLGTDSEI VDSLEISVKN QLSLESEGWV HMMSMPRGNL KDLLITCARA  300
VEENNSFAIN LLIPELRKMV SVSGEPLERL GAYMVEGLVA RLAASGNSIY KALKCKEPKG  360
SELLSYMHFL YEACPYFKFG YMSANGAIAE AVKGEDRIHI IDFHISQGAQ WISLLQALAA  420
RPGGPPFVRI TGIDDSFSAF ARGGGLELVG KRLSHVAGLC KVPFEFHGVG VSGHDIEVEH  480
LGIVPGEAIV VNFTLELHHI PDEAVSTANH RDRILRLIKS LSPKVLTLVE QESNTNTAPF  540
VQRFAETLDY YTAIFESIDL ALPRDDKERI NMEQHCLARE IVNLVACEGE ERVERHEVFG  600
KWKSRLMMAG FRPSPLSALV NATIKTLLQT YSPNYKLLER EGVLYLGWKN RPLVVSSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-652946608375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958142.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3L6QSG90.0A0A3L6QSG9_PANMI; Chitin-inducible gibberellin-responsive protein 2
STRINGSi029418m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]