PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 612aa MW: 65525.3 Da PI: 9.0711

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00043.1.g05100.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.9	2.1e-28	364	417	7	59
EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 7 WrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Zjn_sc00043.1.g05100.1.am.mk 364 WRKYGQKMAKGNPCPRAYYRCTMAnGCPVRKQVQRCAEDRSILITTYEGTHNHP 417 *********************999*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-28	350	419	IPR003657	WRKY domain
PROSITE profile	PS50811	27.703	353	419	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-25	359	419	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	364	417	IPR003657	WRKY domain
SMART	SM00774	4.9E-30	364	418	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080169	Biological Process	cellular response to boron-containing substance deprivation
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MGWKKEKPWP TKSRALTSSW SLSLSLSLSL SLSHATCKEM GELRGRWNTP SPYVGELLQL 60 RVPGLSRKKK YAHGVDRSMA WKLHPIQSII RQVVVFVYPD HCMDKGPGGG GGLLALDASP 120 RALGFRNPLG PPFHSTMDAD DAAVPHQHQH GRRTSVEVDF FSDDKKKTGE PERTTKKEAA 180 DTCLQLLPAG NNNNEDDGST ELAAMRSELG RMNDENQRLR GMVTQVTTSY QALQMHLVTL 240 TQQRAGQTQP PPATTTQQLQ HHQQQDGIMP RPFLDLVPRS SGGDGAEELS NSSTEAGSPR 300 RSSSTGNNKL GERGESPSKV GWLPEGRQQQ DKVHHEQEQQ QQAQEATMRK ARVSVRARSE 360 APIWRKYGQK MAKGNPCPRA YYRCTMANGC PVRKQVQRCA EDRSILITTY EGTHNHPLPP 420 AAMAMASTTS AAASMLLSGS MPSADGGVAS NFLARTVLPC SSSMATISAS APFPTVTLDL 480 TNGPPNATMP LSAACPPQFQ MPLPGGGAAP AFTVPPHVLY NQSRFSGLQM SSPSSGAHVD 540 PASRDDPSSL ADTVSAAAAA ITADPNFTVA LAAAITSIIG GGAAAGNNNN NNNATTTRSN 600 NTTSNNTNSE TH

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MGWKKEKPWP TKSRALTSSW SLSLSLSLSL SLSHATCKEM GELRGRWNTP SPYVGELLQL  60
RVPGLSRKKK YAHGVDRSMA WKLHPIQSII RQVVVFVYPD HCMDKGPGGG GGLLALDASP  120
RALGFRNPLG PPFHSTMDAD DAAVPHQHQH GRRTSVEVDF FSDDKKKTGE PERTTKKEAA  180
DTCLQLLPAG NNNNEDDGST ELAAMRSELG RMNDENQRLR GMVTQVTTSY QALQMHLVTL  240
TQQRAGQTQP PPATTTQQLQ HHQQQDGIMP RPFLDLVPRS SGGDGAEELS NSSTEAGSPR  300
RSSSTGNNKL GERGESPSKV GWLPEGRQQQ DKVHHEQEQQ QQAQEATMRK ARVSVRARSE  360
APIWRKYGQK MAKGNPCPRA YYRCTMANGC PVRKQVQRCA EDRSILITTY EGTHNHPLPP  420
AAMAMASTTS AAASMLLSGS MPSADGGVAS NFLARTVLPC SSSMATISAS APFPTVTLDL  480
TNGPPNATMP LSAACPPQFQ MPLPGGGAAP AFTVPPHVLY NQSRFSGLQM SSPSSGAHVD  540
PASRDDPSSL ADTVSAAAAA ITADPNFTVA LAAAITSIIG GGAAAGNNNN NNNATTTRSN  600
NTTSNNTNSE TH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-18	364	421	20	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00209	DAP	Transfer from AT1G62300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622142.1	1e-174	probable WRKY transcription factor 31 isoform X2
Swissprot	Q9C519	1e-106	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A140F585	1e-177	A0A140F585_9POAL; WAKY 1 protein
STRING	OPUNC01G09130.1	1e-176	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5265	36	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	3e-81	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]