PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g01930.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 325aa    MW: 35346.4 Da    PI: 8.2061
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g01930.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.6e-12119145127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++ C +++rtGtC yGdrC+++H++
  Zjn_sc00043.1.g01930.1.am.mkhc 119 PGEADCAYYLRTGTCAYGDRCRYNHPR 145
                                     57899********************96 PP
2zf-CCCH35.31.9e-11228253227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++C+++ +tG+Ck+G++CkF+H++
  Zjn_sc00043.1.g01930.1.am.mkhc 228 GEKECSYYVKTGHCKFGATCKFHHPE 253
                                     5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-6118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169118146IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-10120145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-6122147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-6124146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619227254IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-9228253IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5228253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5229253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4232252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
FGELLRPARR RRLIASEGSR LVRCPAARGQ MEPQGGEESA GGGGHTGTTG LEGSCVRHVA  60
RNWGLPLVWG KGWCPGFSCS LGFWISPVSC RFAAGSAEAF QELEVRGEEE AEARLPERPG  120
EADCAYYLRT GTCAYGDRCR YNHPRDRRAA AVSARFLLPT LLCSALIFFV LLCFTSHYRG  180
VGRAGARSTP ATLIMTGALN CIQLVNGVGR TIDTVEYPER PGQPLCEGEK ECSYYVKTGH  240
CKFGATCKFH HPELGVADTS HIYPPGQPST VSSAHPYPHF ASLQMGRPPF VPGSYLLGSC  300
PPMMLPSTVM AMQGWNPYIV NSCYF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967812.13e-65zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV37e-64C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0A9P9809e-67A0A0A9P980_ARUDO; Uncharacterized protein
TrEMBLA0A3L6R4301e-66A0A3L6R430_PANMI; Zinc finger CCCH domain-containing protein 5-like
STRINGPavir.Ea00915.1.p4e-67(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.36e-28C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]