PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g01560.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 399aa    MW: 41777.4 Da    PI: 4.7178
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g01560.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.43.3e-3186185297
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 
                                   lfqrlw++e e+++L+G++df+a++g+   +++ d+  fye +++++sf++sksql+eK+rrLKkK++ + ++ a++g  +
  Zjn_sc00043.1.g01560.1.am.mk  86 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFSKSQLIEKLRRLKKKYRVCAARmAAQGAAF 166
                                   79************************99877778*************************************99889***** PP

                        DUF573  79 sfskehdqkifelskkiWg 97 
                                   +f+++h+  i+++++ iW+
  Zjn_sc00043.1.g01560.1.am.mk 167 AFRSAHEGAIYDVARHIWR 185
                                   ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-2787184IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAGADDPAAA AAAASSSAGD EDDEGTDTDA SNSDRAAPQD QDPDRQLLAD NAAPAPSPPA  60
AAAPEPTSAV APPPQPAAET DDSRRLFQRL WTDEEELLIL RGFLDFTARR GTTFASHQYD  120
TGPFYEEIRR RLSFDFSKSQ LIEKLRRLKK KYRVCAARMA AQGAAFAFRS AHEGAIYDVA  180
RHIWRPAVRR DGGQGGGGDA SDEDDINPAA ATAASAALPG VVDDGAGGSA SAHTPRAKGG  240
RRVRRKTAEE LEPQALPTTT SPLILNDVAR QPLVVAVDNL TPTNSQLPVL APSPAPAASG  300
ATEEAVRAIL SPLLRELVSS VTVAGQTGLG LGLNMGFGGI GGVDILGPGL GGGVSVHGSS  360
GDEKWRRQQI LELEVYLKRI ELVREQVAAA LEELRSSEG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654061e-140BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
GenBankJX4284571e-140JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457566.11e-133probable transcription factor At3g04930
TrEMBLA0A2T7DPJ71e-134A0A2T7DPJ7_9POAL; Uncharacterized protein
STRINGSb03g009480.11e-132(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-28DNA-binding storekeeper protein-related transcriptional regulator