PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g00900.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 213aa    MW: 22639.4 Da    PI: 6.3691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g00900.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.1e-093887554
                                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
                           HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54
                                   +e+Er RR++++s   +L +l+Pk     +s K  ++    L +A  YIk+L
  Zjn_sc00043.1.g00900.1.am.mk 38 RKEIERMRRQHMKSLCTKLVSLIPKeH---YSSKdtMTQLGSLDEAAAYIKKL 87
                                  579**********************55...4444459**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-102499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.013387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1238101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-63891No hitNo description
SMARTSM003532.9E-63993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-63987IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEKAKKSSSS DTAAAGGKKS STSNNNSGSS GTTAAVERKE IERMRRQHMK SLCTKLVSLI  60
PKEHYSSKDT MTQLGSLDEA AAYIKKLKER VDDLQQKRSS AQLLASLRGG GVGASTSAAA  120
ATVSSDAGSS EEAAVVAEDE AVAPVVELRL REDDSSLDVV LISSVDRPFK MHEVVTVLEE  180
EGAEIINANF SVAGGKIFYT IHSRVQHLAQ ELA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277517e-40KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967960.14e-75transcription factor bHLH162
RefseqXP_012701590.14e-75transcription factor bHLH162
TrEMBLA0A1E5VNC83e-77A0A1E5VNC8_9POAL; Uncharacterized protein
STRINGPavir.Ea00786.1.p1e-77(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-10bHLH family protein