PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00043.1.g00860.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 269aa MW: 28685.1 Da PI: 9.7689

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00043.1.g00860.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.8	3.9e-08	87	152	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C................TTS-.STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as.............kapskK.lsKaeiLekAveYIksL 54 + +E++RR +++ +L +l+P+ a ++p+k ++ + L A YIk+L Zjn_sc00043.1.g00860.1.am.mk 87 ERKDVEKNRRLHMKGLCLKLSSLVPPsAAakhaalrsapassSNPNKDtVTQLDHLDNAAAYIKHL 152 56889*******************555*********7777777**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.578	83	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-9	85	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-10	85	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-5	87	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDSNQLGAGP TRNRGRDSRR VDRHAGAASN RPGVANERYG SFDWAGSESS SPSLTSLSSA 60 STPPWQRQSG SAAAGEGTAH SERNKMERKD VEKNRRLHMK GLCLKLSSLV PPSAAAKHAA 120 LRSAPASSSN PNKDTVTQLD HLDNAAAYIK HLTARIEELR QRKGSSSRHA LSAPAAAAGD 180 VRMPVIEVRC QDGALEAVLV SAAERPFRMH EVVAVLEQEG AEVVSASFSV VGDKVFYTVH 240 SQALISAGVE GLDASRVADR LRGLLLVEY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967963.1	1e-79	transcription factor bHLH168
TrEMBL	K3XLS4	2e-78	K3XLS4_SETIT; Uncharacterized protein
STRING	Si002847m	4e-79	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-15	bHLH family protein