PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00043.1.g00700.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 322aa MW: 33387.6 Da PI: 8.5722

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00043.1.g00700.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	5.9e-09	234	275	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L++l+P+ +K++ +++LekA+ Y+k Lq Zjn_sc00043.1.g00700.1.am.mk 234 AKVRRERIAEKLKILQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 275 589***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.272	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-12	226	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-12	227	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.00E-11	227	279	No hit	No description
SMART	SM00353	2.7E-10	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-6	235	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MWAPVCRGGS LARRALITAS KRDTAAAVAP RAPQLRPVMY DDEPSSMSLE LFGYHHGVVV 60 DGDHDVVSGA ALPAGGLQLA FDDNFKGGGG CDPADYYSWA SYGGGGSGAS SSSSSSVLSF 120 EKASNGGRHL AAYSTGAGGG DDCAIWMDAA AAGMVDHPAA CNFGFVSPGG SADHAGREIQ 180 ELGSVQPQAK AAQKRARPVG EVRAAAGKKQ CGGSRKTKAK AAAPPTKDPQ SVAAKVRRER 240 IAEKLKILQD LVPNGTKVDL VTMLEKAITY VKFLQLQVKV LAADEFWPAQ GGKAPELSQV 300 KDALDAILAS QHSNKCGSFV NF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455315.1	1e-116	transcription factor bHLH69
TrEMBL	A0A1E5W954	1e-121	A0A1E5W954_9POAL; Transcription factor bHLH83
STRING	Sb03g008290.1	1e-116	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	3e-46	ROOT HAIR DEFECTIVE6