PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00043.1.g00010.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 287aa MW: 31220.5 Da PI: 8.0163 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.8 | 1.1e-30 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++C+++p++ p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +Pvy Zjn_sc00043.1.g00010.1.am.mkhc 4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLISAGPENVRPAIFRSLLYEACGRMLNPVY 82 6*************************99*************************************************** PP DUF260 75 Gavgvilklqqqleqlkaelallk 98 G+vg+++++++ql+q+++e +l++ Zjn_sc00043.1.g00010.1.am.mkhc 83 GSVGLLWSGNWQLCQAAVENVLRG 106 *****************9988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 1.3E-89 | 1 | 278 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.728 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLISAGPEN 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ENVLRGMPIA QPPPAATAVP 120 PLKTCDIRHV ARRRGDDGGA AADIHGVAIS SRGQFKRRGA QRWPRSNTAI ELVFSRPSSA 180 MLVDVRQAQP LNWALAGKLN HEYYASHDDV PETDSNTSVD TVEVSHVSQS EPEAVIDTDG 240 HEVGLDLALG LLPAPHKIEP SQFDNDQHDQ RAEIVKIGFG IKAPIAR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818644.1 | 1e-137 | LOB domain-containing protein 42-like | ||||
Swissprot | Q9M886 | 2e-70 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A3L6R371 | 1e-139 | A0A3L6R371_PANMI; LOB domain-containing protein 42 | ||||
STRING | OB01G11830.1 | 1e-134 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-64 | LOB domain-containing protein 41 |