PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g04940.1.cf.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 540aa    MW: 61813.7 Da    PI: 8.9207
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g04940.1.cf.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.61e-1201655342374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                     ++lL++cA+ v+++d + a +lL++++++as++gd  qRla++f+++L+arla+++s++yk++++++ +    ++ l+a
  Zjn_sc00040.1.g04940.1.cf.mkhc 165 ETLLIHCAQSVATDDRRSAVELLKQIRQHASSNGDGDQRLAHCFANGLEARLAGNGSQIYKSFTMTRFA---CTDLLKA 240
                                     789***************************************************************999...9****** PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157
                                     ++l+  ++P+ k+sh+ aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +++
  Zjn_sc00040.1.g04940.1.cf.mkhc 241 YQLYLAACPFKKISHFFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRPGGPPKLRITGIDTPQPGfrPTKR 319
                                     ******************************************************************************* PP

                            GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                     +eetg+ L+++A++++vpfef++ +a+r +++++e+L+++++E l+Vn++++ ++l+desv  es+r+ vL+++++++P
  Zjn_sc00040.1.g04940.1.cf.mkhc 320 IEETGRYLKDYAQTFNVPFEFQA-IASRYQAVQIEDLHIEKDELLIVNCMFKFKTLMDESVVAESPRNMVLNTIRKMNP 397
                                     ***********************.7****************************************************** PP

                            GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                                     +v+++   + ++n++ F+ rf eal +ysa+fd+le+++pr++e+r  +E +l+gre+ nv++ceg er er et+++W
  Zjn_sc00040.1.g04940.1.cf.mkhc 398 HVFIHGIINGSYNAPFFVSRFREALFHYSAIFDMLETNIPRDNEQRLLIESALFGREAINVISCEGLERLERPETYKQW 476
                                     ******************************************************************************* PP

                            GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     + r ++aGFk++p++++++k a+  +r +++d +  +e++ +l++gWk+r L+++S W+
  Zjn_sc00040.1.g04940.1.cf.mkhc 477 QVRNQRAGFKQLPINQDIMKRAREKVRCYHKD-FIFDEDNRWLLQGWKGRILFALSTWK 534
                                     ******************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.582138515IPR005202Transcription factor GRAS
PfamPF035143.6E-118165534IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MPVVGFTEFA LQSQQAMHFS RGLEEASRFL PDESKLVIDL EKSTSVPSLP SNVKEEKKFV  60
EVKTEKPEVE SAAHRGKKHF YGDDLDAEEG RCTKHSALAI DTDHLVREMM DKVLLCNGET  120
CSKGVKELRE ALQNEKHSHG GHGKGSGHGK GRGKKQPKKE VVDLETLLIH CAQSVATDDR  180
RSAVELLKQI RQHASSNGDG DQRLAHCFAN GLEARLAGNG SQIYKSFTMT RFACTDLLKA  240
YQLYLAACPF KKISHFFANQ TIMNAVEKAK KVHIVDYGIY YGFQWPCLIQ RLSTRPGGPP  300
KLRITGIDTP QPGFRPTKRI EETGRYLKDY AQTFNVPFEF QAIASRYQAV QIEDLHIEKD  360
ELLIVNCMFK FKTLMDESVV AESPRNMVLN TIRKMNPHVF IHGIINGSYN APFFVSRFRE  420
ALFHYSAIFD MLETNIPRDN EQRLLIESAL FGREAINVIS CEGLERLERP ETYKQWQVRN  480
QRAGFKQLPI NQDIMKRARE KVRCYHKDFI FDEDNRWLLQ GWKGRILFAL STWKPDHRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-571685348375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970541.10.0scarecrow-like protein 9
SwissprotO809331e-180SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1E5VF220.0A0A1E5VF22_9POAL; Scarecrow-like protein 9
STRINGPavir.Eb03680.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein