PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g03940.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 698aa    MW: 75698.4 Da    PI: 8.4291
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g03940.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.92.1e-33374430259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers+ d++++ei+Y+g+Hnh 
  Zjn_sc00040.1.g03940.1.am.mkhc 374 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSQ-DGQITEIVYKGTHNHA 430
                                     8****************************************.***************7 PP
2WRKY105.43e-33527585159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+++Cpv+k+ver+++d ++v++tYeg+Hnh+
  Zjn_sc00040.1.g03940.1.am.mkhc 527 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPSCPVRKHVERASHDLRAVITTYEGKHNHD 585
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-29365432IPR003657WRKY domain
SuperFamilySSF1182902.22E-25368432IPR003657WRKY domain
PROSITE profilePS5081123.755368432IPR003657WRKY domain
SMARTSM007742.4E-36373431IPR003657WRKY domain
PfamPF031061.3E-25374429IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-37512587IPR003657WRKY domain
SuperFamilySSF1182903.92E-29519587IPR003657WRKY domain
PROSITE profilePS5081137.688522587IPR003657WRKY domain
SMARTSM007743.5E-38527586IPR003657WRKY domain
PfamPF031063.9E-25528585IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MPRRHRAAPR GIASPLLVVG IGFSPSLRAL ASIERRLFNA TSFDRSMSSA QLGPNNPKEL  60
GFPPPPSRLQ SPPKSHHRAS QPGQPRHRLE TARRGSIGSC DEFNFPLFRP MTTSSSGSIK  120
VPANSRPGAF SFASTSFADM MGAGPAAAGG ASRYKAMTPP SLPLSPPLVS PSSFNILGGL  180
NPADFLDSPV LLTSSFDTTP PLPCHFGARG RGALTFSLWT YEVQDVEQSA NAFCMFQIFP  240
SPTVGAFASQ QYSWMPAQGE EQGSNNKEEQ RQSYPDFSFQ TPAPTSEEAV RTTTTFQTPI  300
PSASLGEETY TSQQQQPWGY PQQSGMDAGA TQAAFGSAST FQATSSDATT MALHVQGSGA  360
GGYGQTQSQR RSSDDGYNWR KYGQKQVKGS ENPRSYYKCT FPNCPTKKKV ERSQDGQITE  420
IVYKGTHNHA KPQNTRRNSS SAALLLQSGD ASEHSFGGTP VGTPENSASF GDDDTAGNAG  480
GDELDEDEPD SKRWRKESEA EGLSMAGNRT VREPRVVVQT MSDIDILDDG YRWRKYGQKV  540
VKGNPNPRSY YKCTTPSCPV RKHVERASHD LRAVITTYEG KHNHDVPAAR GSAALYRPAP  600
PPPDNHYLAA AGVRPPSMAY QNSGAGQQYA HGFSGQSSFG LQSATGGSFA FSGFDDLTGS  660
YMSQHQQQQR QNDAMHASRA KEEPREDMFF QQSMMYSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36358588378Probable WRKY transcription factor 4
2lex_A3e-36358588378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769251e-141AY676925.1 Oryza sativa (indica cultivar-group) transcription factor WRKY24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970421.30.0WRKY transcription factor WRKY24
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1E5WCJ00.0A0A1E5WCJ0_9POAL; Putative WRKY transcription factor 33
STRINGSi000906m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.14e-94WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]