PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g01400.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 304aa    MW: 32636 Da    PI: 8.2247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g01400.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09132179455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                      h +rEr RR+r+ ++f+ L  llP+ a      K  K +i+  A  YIk+L+
  Zjn_sc00040.1.g01400.1.sm.mkhc 132 RHIMRERLRRERLSQGFADLHALLPPgA-----SKGGKNDIVGAAAGYIKELE 179
                                     599***********************66.....7888999**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-14127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-12128199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.805128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-5134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MANGTAPYTH GSPAMDPLYF DLQDAIIDID DVDYLTSLGD AVTLPPAPGS AFAAYQEGTS  60
LEPLTMSRGG GRCSSSGGAN VHRRMFRYLR RIGDAAAAAA SAGNVVAGAD PEPSHRAGAE  120
TSQAPRGSTR FRHIMRERLR RERLSQGFAD LHALLPPGAS KGGKNDIVGA AAGYIKELEG  180
RKRRLSARND ALIEQVARTG SSMVVNVRAE IEQHSVAVDV FEMVLQRLKA MEERRVTGIR  240
SCFDGGGMWM NVAVHCCQVP SPDVGKAITN ALTKELEENA LGMQVPRSTK PAFSCQVERG  300
VPMW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RLRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9488632e-44EU948863.1 Zea mays clone 388069 mRNA sequence.
GenBankKJ7280302e-44KJ728030.1 Zea mays clone pUT6169 bHLH transcription factor (bHLH79) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701619.18e-86transcription factor BHLH148
TrEMBLA0A1E5VF491e-84A0A1E5VF49_9POAL; Uncharacterized protein
TrEMBLK3XK972e-84K3XK97_SETIT; Uncharacterized protein
STRINGSi002320m3e-85(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432